miRNA display CGI


Results 1 - 20 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24451 3' -59.6 NC_005264.1 + 159304 0.66 0.804861
Target:  5'- gCUGgACGCcGCCGCGUcgCGGuUCGACGa -3'
miRNA:   3'- -GGCaUGCGuUGGCGCG--GCC-GGCUGCg -5'
24451 3' -59.6 NC_005264.1 + 161663 0.66 0.796342
Target:  5'- uCCGcUGCGUAccccauCgCGCGCCGGCaGACugGCg -3'
miRNA:   3'- -GGC-AUGCGUu-----G-GCGCGGCCGgCUG--CG- -5'
24451 3' -59.6 NC_005264.1 + 113467 0.66 0.796342
Target:  5'- aCCGacccCGCggUCGUGCCacGGUCG-CGCg -3'
miRNA:   3'- -GGCau--GCGuuGGCGCGG--CCGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 60259 0.66 0.82065
Target:  5'- gCGgucACGCGagcugcggugagcGCCGCGUCGGgcaUGACGUa -3'
miRNA:   3'- gGCa--UGCGU-------------UGGCGCGGCCg--GCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 95086 0.66 0.796342
Target:  5'- ---cACGCAACUGCGaCCuGcGCCGAgauaCGCg -3'
miRNA:   3'- ggcaUGCGUUGGCGC-GG-C-CGGCU----GCG- -5'
24451 3' -59.6 NC_005264.1 + 54588 0.66 0.813238
Target:  5'- -aGUgaGCGUggUCaaCGCCGGCCucGGCGCg -3'
miRNA:   3'- ggCA--UGCGuuGGc-GCGGCCGG--CUGCG- -5'
24451 3' -59.6 NC_005264.1 + 24216 0.66 0.80232
Target:  5'- gCCGaa-GCcAgCGCGCCGGgauaguaagacacuCCGGCGCc -3'
miRNA:   3'- -GGCaugCGuUgGCGCGGCC--------------GGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 70196 0.66 0.813238
Target:  5'- gCCuUACGCAcauUCGUGCUGGCaGGCGg -3'
miRNA:   3'- -GGcAUGCGUu--GGCGCGGCCGgCUGCg -5'
24451 3' -59.6 NC_005264.1 + 79592 0.66 0.804861
Target:  5'- gCCGcgccaGCGCAucaGCGgCGGCCuaGACGCc -3'
miRNA:   3'- -GGCa----UGCGUuggCGCgGCCGG--CUGCG- -5'
24451 3' -59.6 NC_005264.1 + 119889 0.66 0.804861
Target:  5'- uCCGagGCGUuGCCGCGCCcGGacguaCGACu- -3'
miRNA:   3'- -GGCa-UGCGuUGGCGCGG-CCg----GCUGcg -5'
24451 3' -59.6 NC_005264.1 + 160368 0.66 0.804861
Target:  5'- aUCGUcgaaGCAGCCGCGaaGGCCca-GCu -3'
miRNA:   3'- -GGCAug--CGUUGGCGCggCCGGcugCG- -5'
24451 3' -59.6 NC_005264.1 + 43843 0.66 0.804861
Target:  5'- gCGUACGUuuuuUgGCGCUggGGCCGGCa- -3'
miRNA:   3'- gGCAUGCGuu--GgCGCGG--CCGGCUGcg -5'
24451 3' -59.6 NC_005264.1 + 19881 0.66 0.819014
Target:  5'- aCCGc-CGCGGCCGCGCUaGCCauuucgggugcuuuGugGUg -3'
miRNA:   3'- -GGCauGCGUUGGCGCGGcCGG--------------CugCG- -5'
24451 3' -59.6 NC_005264.1 + 110095 0.66 0.813238
Target:  5'- aUCGUACcCucGCCGUGUgaUGGCCGGUGCg -3'
miRNA:   3'- -GGCAUGcGu-UGGCGCG--GCCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 92687 0.66 0.813238
Target:  5'- aCC-UACGCGGCCGCcuccuggaGCUuauuGCCGcACGCg -3'
miRNA:   3'- -GGcAUGCGUUGGCG--------CGGc---CGGC-UGCG- -5'
24451 3' -59.6 NC_005264.1 + 162687 0.66 0.813238
Target:  5'- aCGgucgGCGCGcugCGCGCCGGCguuaaGGCGg -3'
miRNA:   3'- gGCa---UGCGUug-GCGCGGCCGg----CUGCg -5'
24451 3' -59.6 NC_005264.1 + 145322 0.66 0.82065
Target:  5'- aCG-ACGCAcuuaucuAUCGCG-CGGUCGAgGCa -3'
miRNA:   3'- gGCaUGCGU-------UGGCGCgGCCGGCUgCG- -5'
24451 3' -59.6 NC_005264.1 + 79721 0.66 0.813238
Target:  5'- gCCuc-CGCGGCCuugGCGCCcGUCGGCGUa -3'
miRNA:   3'- -GGcauGCGUUGG---CGCGGcCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 128517 0.66 0.813238
Target:  5'- gCGUcaGCGaguCAGCCaGCGUCaGGCgCGGCGCc -3'
miRNA:   3'- gGCA--UGC---GUUGG-CGCGG-CCG-GCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 61236 0.66 0.804861
Target:  5'- aCGUugGCGAUggCGCGCUccaGCucaCGGCGCg -3'
miRNA:   3'- gGCAugCGUUG--GCGCGGc--CG---GCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.