miRNA display CGI


Results 1 - 20 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24451 3' -59.6 NC_005264.1 + 74727 1.12 0.001118
Target:  5'- cCCGUACGCAACCGCGCCGGCCGACGCu -3'
miRNA:   3'- -GGCAUGCGUUGGCGCGGCCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 155769 0.93 0.023275
Target:  5'- cCCGcaGCGCGACgGCGCCGGCCGGCGCc -3'
miRNA:   3'- -GGCa-UGCGUUGgCGCGGCCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 36743 0.93 0.023275
Target:  5'- cCCGcaGCGCGACgGCGCCGGCCGGCGCc -3'
miRNA:   3'- -GGCa-UGCGUUGgCGCGGCCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 95442 0.88 0.048253
Target:  5'- gCCGUcguggaauACGCuACCGCGCCGGCgGGCGCa -3'
miRNA:   3'- -GGCA--------UGCGuUGGCGCGGCCGgCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 126067 0.86 0.068633
Target:  5'- uUCGUAUucugcgcgcaagcgGCGACgGCGCCGGCCGGCGCc -3'
miRNA:   3'- -GGCAUG--------------CGUUGgCGCGGCCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 7040 0.86 0.068633
Target:  5'- uUCGUAUucugcgcgcaagcgGCGACgGCGCCGGCCGGCGCc -3'
miRNA:   3'- -GGCAUG--------------CGUUGgCGCGGCCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 88094 0.83 0.111812
Target:  5'- -aGUGCGCGucggGCacaGCGUCGGCCGGCGCg -3'
miRNA:   3'- ggCAUGCGU----UGg--CGCGGCCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 96223 0.79 0.200654
Target:  5'- cUCGggcCGCGACgGCGCCGGCaacgCGGCGCa -3'
miRNA:   3'- -GGCau-GCGUUGgCGCGGCCG----GCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 67368 0.78 0.235774
Target:  5'- aCGUagcgcccGCGCucGCUGCGCCcGCCGGCGCg -3'
miRNA:   3'- gGCA-------UGCGu-UGGCGCGGcCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 3959 0.77 0.247443
Target:  5'- ---aACGUccuGGCCGCGCCGGCCGGCu- -3'
miRNA:   3'- ggcaUGCG---UUGGCGCGGCCGGCUGcg -5'
24451 3' -59.6 NC_005264.1 + 122985 0.77 0.247443
Target:  5'- ---aACGUccuGGCCGCGCCGGCCGGCu- -3'
miRNA:   3'- ggcaUGCG---UUGGCGCGGCCGGCUGcg -5'
24451 3' -59.6 NC_005264.1 + 16472 0.77 0.253166
Target:  5'- uCCGacgACGCAGCCGCGgUGGCCuGCGg -3'
miRNA:   3'- -GGCa--UGCGUUGGCGCgGCCGGcUGCg -5'
24451 3' -59.6 NC_005264.1 + 132446 0.77 0.258996
Target:  5'- aCCGgcGCGCGACCGcCGCCG-CCGAgaCGCg -3'
miRNA:   3'- -GGCa-UGCGUUGGC-GCGGCcGGCU--GCG- -5'
24451 3' -59.6 NC_005264.1 + 13419 0.77 0.258996
Target:  5'- aCCGgcGCGCGACCGcCGCCG-CCGAgaCGCg -3'
miRNA:   3'- -GGCa-UGCGUUGGC-GCGGCcGGCU--GCG- -5'
24451 3' -59.6 NC_005264.1 + 1538 0.77 0.264937
Target:  5'- cCCGcgGCGuUGACCGCGCCGGCaauaGGCGg -3'
miRNA:   3'- -GGCa-UGC-GUUGGCGCGGCCGg---CUGCg -5'
24451 3' -59.6 NC_005264.1 + 120565 0.77 0.264937
Target:  5'- cCCGcgGCGuUGACCGCGCCGGCaauaGGCGg -3'
miRNA:   3'- -GGCa-UGC-GUUGGCGCGGCCGg---CUGCg -5'
24451 3' -59.6 NC_005264.1 + 40948 0.77 0.277148
Target:  5'- cCCGgucgauCGCAGCCGCaGCgGGCgaCGGCGCg -3'
miRNA:   3'- -GGCau----GCGUUGGCG-CGgCCG--GCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 159975 0.77 0.277148
Target:  5'- cCCGgucgauCGCAGCCGCaGCgGGCgaCGGCGCg -3'
miRNA:   3'- -GGCau----GCGUUGGCG-CGgCCG--GCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 104470 0.76 0.2963
Target:  5'- uCCG-GCGCAuAUCGCGCCGGCCc-CGCc -3'
miRNA:   3'- -GGCaUGCGU-UGGCGCGGCCGGcuGCG- -5'
24451 3' -59.6 NC_005264.1 + 101965 0.76 0.298931
Target:  5'- gCGUACGCcgagagacuagaaaaAcuuuGCCGCGCaCGcGCCGACGCc -3'
miRNA:   3'- gGCAUGCG---------------U----UGGCGCG-GC-CGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.