miRNA display CGI


Results 21 - 40 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24451 3' -59.6 NC_005264.1 + 125228 0.66 0.836664
Target:  5'- gCCGUGCGaGACgCGUccuuugaccccccGCCgcGGCCGcCGCg -3'
miRNA:   3'- -GGCAUGCgUUG-GCG-------------CGG--CCGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 34257 0.66 0.836664
Target:  5'- cUCGUGCGCGcgguaauccgcguGCUGCGCU--CCGcCGCg -3'
miRNA:   3'- -GGCAUGCGU-------------UGGCGCGGccGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 6201 0.66 0.836664
Target:  5'- gCCGUGCGaGACgCGUccuuugaccccccGCCgcGGCCGcCGCg -3'
miRNA:   3'- -GGCAUGCgUUG-GCG-------------CGG--CCGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 142586 0.66 0.836664
Target:  5'- aCCGUccccugaAUGcCGGCCGCGacgaUGGCC-ACGCc -3'
miRNA:   3'- -GGCA-------UGC-GUUGGCGCg---GCCGGcUGCG- -5'
24451 3' -59.6 NC_005264.1 + 102923 0.66 0.829538
Target:  5'- aUCGUACGuCAcguuCUGCGCCacagggcacuGGCCcgcGAUGCg -3'
miRNA:   3'- -GGCAUGC-GUu---GGCGCGG----------CCGG---CUGCG- -5'
24451 3' -59.6 NC_005264.1 + 66374 0.66 0.829538
Target:  5'- aCGUugGUGGCCGacuCGCUGGaaGcCGCu -3'
miRNA:   3'- gGCAugCGUUGGC---GCGGCCggCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 42636 0.66 0.829538
Target:  5'- uCCGcUGCGUAcccccauCgCGCGCCGGCaGACugGCg -3'
miRNA:   3'- -GGC-AUGCGUu------G-GCGCGGCCGgCUG--CG- -5'
24451 3' -59.6 NC_005264.1 + 109384 0.66 0.829538
Target:  5'- gCCGU-CGgAACC-UGUucuUGGCCGACGUg -3'
miRNA:   3'- -GGCAuGCgUUGGcGCG---GCCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 121201 0.66 0.829538
Target:  5'- cCCGgccGCGCuGCCGCauCUGGCCaGcCGCu -3'
miRNA:   3'- -GGCa--UGCGuUGGCGc-GGCCGG-CuGCG- -5'
24451 3' -59.6 NC_005264.1 + 131265 0.66 0.829538
Target:  5'- cCCGc-CGUAACUGCGCgGGgUaACGCg -3'
miRNA:   3'- -GGCauGCGUUGGCGCGgCCgGcUGCG- -5'
24451 3' -59.6 NC_005264.1 + 136185 0.66 0.829538
Target:  5'- gUCGUucuaGC-GCgGCGCCGGCgCcGCGCu -3'
miRNA:   3'- -GGCAug--CGuUGgCGCGGCCG-GcUGCG- -5'
24451 3' -59.6 NC_005264.1 + 87130 0.66 0.829538
Target:  5'- cCCGcgggGCGCAccagucuUCGCGCCGaaagaCGGCGCu -3'
miRNA:   3'- -GGCa---UGCGUu------GGCGCGGCcg---GCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 42763 0.66 0.829538
Target:  5'- aCGUGCcgaGCGACCcggguggccaGUuaCGGCCGGCGg -3'
miRNA:   3'- gGCAUG---CGUUGG----------CGcgGCCGGCUGCg -5'
24451 3' -59.6 NC_005264.1 + 161789 0.66 0.829538
Target:  5'- aCGUGCcgaGCGACCcggguggccaGUuaCGGCCGGCGg -3'
miRNA:   3'- gGCAUG---CGUUGG----------CGcgGCCGGCUGCg -5'
24451 3' -59.6 NC_005264.1 + 159948 0.66 0.829538
Target:  5'- gCCGU-CGCccuCCcCGCCGcGCCG-CGCn -3'
miRNA:   3'- -GGCAuGCGuu-GGcGCGGC-CGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 137293 0.66 0.829538
Target:  5'- aCGaGCGCGAcaagcgccuuguCCGCGCCG-CCuuaugGGCGCu -3'
miRNA:   3'- gGCaUGCGUU------------GGCGCGGCcGG-----CUGCG- -5'
24451 3' -59.6 NC_005264.1 + 32288 0.66 0.829538
Target:  5'- cCUGcGCGUAGCacaCGCGCCG--CGACGCu -3'
miRNA:   3'- -GGCaUGCGUUG---GCGCGGCcgGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 149661 0.66 0.829538
Target:  5'- uCCGcGCGCAG-CGCGuaGGUCGuCGUc -3'
miRNA:   3'- -GGCaUGCGUUgGCGCggCCGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 126955 0.66 0.829538
Target:  5'- aCGUaACGCuGCCGCGagaCGaGCCGGagggGCu -3'
miRNA:   3'- gGCA-UGCGuUGGCGCg--GC-CGGCUg---CG- -5'
24451 3' -59.6 NC_005264.1 + 108066 0.66 0.829538
Target:  5'- cCCGguguucuggaUGCGCAACCaCGCCGuGCgGAUcgaaaGCa -3'
miRNA:   3'- -GGC----------AUGCGUUGGcGCGGC-CGgCUG-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.