miRNA display CGI


Results 1 - 20 of 422 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24451 3' -59.6 NC_005264.1 + 153 0.69 0.650945
Target:  5'- gCCGgcGCGCAGCgCGcCGaCCGuacaccuacgaccucGCCGGCGCg -3'
miRNA:   3'- -GGCa-UGCGUUG-GC-GC-GGC---------------CGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 863 0.66 0.804861
Target:  5'- uCCGagGCGUuGCCGCGCCcGGacguaCGACu- -3'
miRNA:   3'- -GGCa-UGCGuUGGCGCGG-CCg----GCUGcg -5'
24451 3' -59.6 NC_005264.1 + 1141 0.7 0.617814
Target:  5'- aCGgGCGCAcgggacgauccgGCCGCcaGUCuGCCGGCGCg -3'
miRNA:   3'- gGCaUGCGU------------UGGCG--CGGcCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 1538 0.77 0.264937
Target:  5'- cCCGcgGCGuUGACCGCGCCGGCaauaGGCGg -3'
miRNA:   3'- -GGCa-UGC-GUUGGCGCGGCCGg---CUGCg -5'
24451 3' -59.6 NC_005264.1 + 2384 0.67 0.778908
Target:  5'- gCCGUcgccCGCAggaGCCcgGCGCCGGCC--UGCc -3'
miRNA:   3'- -GGCAu---GCGU---UGG--CGCGGCCGGcuGCG- -5'
24451 3' -59.6 NC_005264.1 + 2723 0.67 0.751882
Target:  5'- gCCGccCGCGGCCGgGCCcgucuucuaGGUuuaaCGGCGCg -3'
miRNA:   3'- -GGCauGCGUUGGCgCGG---------CCG----GCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 2831 0.66 0.837447
Target:  5'- -gGUugGCGGa-GgGCCGGUCG-CGCu -3'
miRNA:   3'- ggCAugCGUUggCgCGGCCGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 3068 0.66 0.837447
Target:  5'- gCUGUcucgcCGCGACUgGCGgCGGCCGAgGa -3'
miRNA:   3'- -GGCAu----GCGUUGG-CGCgGCCGGCUgCg -5'
24451 3' -59.6 NC_005264.1 + 3409 0.68 0.708845
Target:  5'- uCgGUGCGCGggggagggacguaggGCCGCGCCcGcGCUGcuCGCa -3'
miRNA:   3'- -GgCAUGCGU---------------UGGCGCGG-C-CGGCu-GCG- -5'
24451 3' -59.6 NC_005264.1 + 3609 0.69 0.627558
Target:  5'- aCCGc-CGCGggggGCCGCGagGGCgGGCGCg -3'
miRNA:   3'- -GGCauGCGU----UGGCGCggCCGgCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 3740 0.68 0.695464
Target:  5'- aCGUcuCGCGAUCGCcgGCuucaCGGCgGACGCa -3'
miRNA:   3'- gGCAu-GCGUUGGCG--CG----GCCGgCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 3855 0.67 0.778908
Target:  5'- aCCGcagacuCGCAGCCGagGUC-GCCGugGCc -3'
miRNA:   3'- -GGCau----GCGUUGGCg-CGGcCGGCugCG- -5'
24451 3' -59.6 NC_005264.1 + 3959 0.77 0.247443
Target:  5'- ---aACGUccuGGCCGCGCCGGCCGGCu- -3'
miRNA:   3'- ggcaUGCG---UUGGCGCGGCCGGCUGcg -5'
24451 3' -59.6 NC_005264.1 + 4582 0.69 0.627558
Target:  5'- gCCGggaACGCAggcccuccccGCCaGCGCCGcGgCGGCGUa -3'
miRNA:   3'- -GGCa--UGCGU----------UGG-CGCGGC-CgGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 4719 0.69 0.627558
Target:  5'- gCUGguccagACGCcGCUGCccGCCGaGCCGGCGUc -3'
miRNA:   3'- -GGCa-----UGCGuUGGCG--CGGC-CGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 4768 0.71 0.559772
Target:  5'- aUGUGCGCcuuCUGCGCgGcGCCGuucGCGCa -3'
miRNA:   3'- gGCAUGCGuu-GGCGCGgC-CGGC---UGCG- -5'
24451 3' -59.6 NC_005264.1 + 4995 0.66 0.821466
Target:  5'- gUCGU-CGUucucguCCGCGCCggGGUCGcCGCg -3'
miRNA:   3'- -GGCAuGCGuu----GGCGCGG--CCGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 5144 0.74 0.399044
Target:  5'- cUCGaUGCGCGGCCGCGCCGcaucguCCGAaGCc -3'
miRNA:   3'- -GGC-AUGCGUUGGCGCGGCc-----GGCUgCG- -5'
24451 3' -59.6 NC_005264.1 + 6201 0.66 0.836664
Target:  5'- gCCGUGCGaGACgCGUccuuugaccccccGCCgcGGCCGcCGCg -3'
miRNA:   3'- -GGCAUGCgUUG-GCG-------------CGG--CCGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 6661 0.67 0.760997
Target:  5'- gCCG-GCGCcGCCaCGCCGcaaaGCCG-CGCa -3'
miRNA:   3'- -GGCaUGCGuUGGcGCGGC----CGGCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.