miRNA display CGI


Results 1 - 20 of 422 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24451 3' -59.6 NC_005264.1 + 154053 0.73 0.407205
Target:  5'- ---aGCGCuGGCCGUcCUGGCCGACGCc -3'
miRNA:   3'- ggcaUGCG-UUGGCGcGGCCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 36098 0.75 0.336926
Target:  5'- uUCG-GCGCGGCUGgcagauggguacuCGCCGGCCGACGa -3'
miRNA:   3'- -GGCaUGCGUUGGC-------------GCGGCCGGCUGCg -5'
24451 3' -59.6 NC_005264.1 + 60609 0.75 0.337649
Target:  5'- cUCGUAUGCcGCgGCaGCCGGCUcGCGCa -3'
miRNA:   3'- -GGCAUGCGuUGgCG-CGGCCGGcUGCG- -5'
24451 3' -59.6 NC_005264.1 + 86427 0.75 0.352334
Target:  5'- aCCGUgGCGCAcccaAUCGCGCaCGGCauaauggaGACGCu -3'
miRNA:   3'- -GGCA-UGCGU----UGGCGCG-GCCGg-------CUGCG- -5'
24451 3' -59.6 NC_005264.1 + 148303 0.74 0.367466
Target:  5'- aCCGcGCGCGugCGCGCCGGUguuCGUa -3'
miRNA:   3'- -GGCaUGCGUugGCGCGGCCGgcuGCG- -5'
24451 3' -59.6 NC_005264.1 + 127387 0.74 0.390988
Target:  5'- aCCGU-CGCugaugcuuACCgGCGCCGGaCgCGGCGCg -3'
miRNA:   3'- -GGCAuGCGu-------UGG-CGCGGCC-G-GCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 5144 0.74 0.399044
Target:  5'- cUCGaUGCGCGGCCGCGCCGcaucguCCGAaGCc -3'
miRNA:   3'- -GGC-AUGCGUUGGCGCGGCc-----GGCUgCG- -5'
24451 3' -59.6 NC_005264.1 + 25547 0.73 0.407205
Target:  5'- gCCGUACGC--CCGCGUCGccGCCaACGCc -3'
miRNA:   3'- -GGCAUGCGuuGGCGCGGC--CGGcUGCG- -5'
24451 3' -59.6 NC_005264.1 + 75240 0.73 0.407205
Target:  5'- gCCGUcuuguauaACGCGACCacGCGCCGuguucguccucGUCGGCGCu -3'
miRNA:   3'- -GGCA--------UGCGUUGG--CGCGGC-----------CGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 18412 0.75 0.330475
Target:  5'- uCCGgccgGCGCAGgCGCGCCcucucGCuCGGCGCg -3'
miRNA:   3'- -GGCa---UGCGUUgGCGCGGc----CG-GCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 34733 0.76 0.309631
Target:  5'- aUCGUugGCGuucuucccGgCGCGCCGGUCGcCGCu -3'
miRNA:   3'- -GGCAugCGU--------UgGCGCGGCCGGCuGCG- -5'
24451 3' -59.6 NC_005264.1 + 23022 0.76 0.309631
Target:  5'- -gGUACGCGuuucgucCCGCGaCGGCCGACGg -3'
miRNA:   3'- ggCAUGCGUu------GGCGCgGCCGGCUGCg -5'
24451 3' -59.6 NC_005264.1 + 126067 0.86 0.068633
Target:  5'- uUCGUAUucugcgcgcaagcgGCGACgGCGCCGGCCGGCGCc -3'
miRNA:   3'- -GGCAUG--------------CGUUGgCGCGGCCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 88094 0.83 0.111812
Target:  5'- -aGUGCGCGucggGCacaGCGUCGGCCGGCGCg -3'
miRNA:   3'- ggCAUGCGU----UGg--CGCGGCCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 67368 0.78 0.235774
Target:  5'- aCGUagcgcccGCGCucGCUGCGCCcGCCGGCGCg -3'
miRNA:   3'- gGCA-------UGCGu-UGGCGCGGcCGGCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 122985 0.77 0.247443
Target:  5'- ---aACGUccuGGCCGCGCCGGCCGGCu- -3'
miRNA:   3'- ggcaUGCG---UUGGCGCGGCCGGCUGcg -5'
24451 3' -59.6 NC_005264.1 + 132446 0.77 0.258996
Target:  5'- aCCGgcGCGCGACCGcCGCCG-CCGAgaCGCg -3'
miRNA:   3'- -GGCa-UGCGUUGGC-GCGGCcGGCU--GCG- -5'
24451 3' -59.6 NC_005264.1 + 120565 0.77 0.264937
Target:  5'- cCCGcgGCGuUGACCGCGCCGGCaauaGGCGg -3'
miRNA:   3'- -GGCa-UGC-GUUGGCGCGGCCGg---CUGCg -5'
24451 3' -59.6 NC_005264.1 + 159975 0.77 0.277148
Target:  5'- cCCGgucgauCGCAGCCGCaGCgGGCgaCGGCGCg -3'
miRNA:   3'- -GGCau----GCGUUGGCG-CGgCCG--GCUGCG- -5'
24451 3' -59.6 NC_005264.1 + 142680 0.76 0.302909
Target:  5'- gUCGUGcCGCGAUCuuggGCGCCGGC-GGCGCg -3'
miRNA:   3'- -GGCAU-GCGUUGG----CGCGGCCGgCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.