miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24451 5' -52.7 NC_005264.1 + 62066 0.66 0.97779
Target:  5'- gGCGCGCAUgGCUUGG-GCcc-ACGUa -3'
miRNA:   3'- -UGCGCGUGaCGAACCgCGuuaUGUAc -5'
24451 5' -52.7 NC_005264.1 + 142508 0.66 0.97779
Target:  5'- gGCGCGUuucCUGCUUgccGGUGCccacGAUACAg- -3'
miRNA:   3'- -UGCGCGu--GACGAA---CCGCG----UUAUGUac -5'
24451 5' -52.7 NC_005264.1 + 18075 0.66 0.977051
Target:  5'- gGCGCGCGggcauuuaauuCUGCUguuaugccggcagaUGGCGCGAgagGCu-- -3'
miRNA:   3'- -UGCGCGU-----------GACGA--------------ACCGCGUUa--UGuac -5'
24451 5' -52.7 NC_005264.1 + 87677 0.66 0.975257
Target:  5'- aACGCGCuACUGCacaacucUGGCGUGGcccuCGUGg -3'
miRNA:   3'- -UGCGCG-UGACGa------ACCGCGUUau--GUAC- -5'
24451 5' -52.7 NC_005264.1 + 162693 0.66 0.975257
Target:  5'- -gGCGCGCUGCgcgccGGCGUuaagGCGg- -3'
miRNA:   3'- ugCGCGUGACGaa---CCGCGuua-UGUac -5'
24451 5' -52.7 NC_005264.1 + 43667 0.66 0.975257
Target:  5'- -gGCGCGCUGCgcgccGGCGUuaagGCGg- -3'
miRNA:   3'- ugCGCGUGACGaa---CCGCGuua-UGUac -5'
24451 5' -52.7 NC_005264.1 + 109994 0.66 0.972519
Target:  5'- uAUGCGCGCaGCUcccGCGUAgcacuGUGCAUGa -3'
miRNA:   3'- -UGCGCGUGaCGAac-CGCGU-----UAUGUAC- -5'
24451 5' -52.7 NC_005264.1 + 129586 0.66 0.972519
Target:  5'- uGCGCGCuCUGCa-GGCGCugcgGCGc- -3'
miRNA:   3'- -UGCGCGuGACGaaCCGCGuua-UGUac -5'
24451 5' -52.7 NC_005264.1 + 117008 0.66 0.969568
Target:  5'- -gGCGguCUGCgcGGCGCAugacgaGUACAg- -3'
miRNA:   3'- ugCGCguGACGaaCCGCGU------UAUGUac -5'
24451 5' -52.7 NC_005264.1 + 84931 0.66 0.966398
Target:  5'- uGCGCGCuCUGUUguagugUGGCGCcgGGUGCu-- -3'
miRNA:   3'- -UGCGCGuGACGA------ACCGCG--UUAUGuac -5'
24451 5' -52.7 NC_005264.1 + 10321 0.66 0.966398
Target:  5'- gACGCGCACUGagcaaGCGCGGaACGa- -3'
miRNA:   3'- -UGCGCGUGACgaac-CGCGUUaUGUac -5'
24451 5' -52.7 NC_005264.1 + 129348 0.66 0.966398
Target:  5'- gACGCGCACUGagcaaGCGCGGaACGa- -3'
miRNA:   3'- -UGCGCGUGACgaac-CGCGUUaUGUac -5'
24451 5' -52.7 NC_005264.1 + 106331 0.66 0.964389
Target:  5'- gGCGCGCcgaugauauuuucugACUgccGCUUGGCGCGGUuagauuucuccGCGUu -3'
miRNA:   3'- -UGCGCG---------------UGA---CGAACCGCGUUA-----------UGUAc -5'
24451 5' -52.7 NC_005264.1 + 125155 0.66 0.962296
Target:  5'- gGCGUGgGCUGCgaugcuuguggGGCGcCGAUGCcgGc -3'
miRNA:   3'- -UGCGCgUGACGaa---------CCGC-GUUAUGuaC- -5'
24451 5' -52.7 NC_005264.1 + 142804 0.67 0.959375
Target:  5'- gACGUGaCGCUGCacgGGUGCGAgcgcgcCGUGg -3'
miRNA:   3'- -UGCGC-GUGACGaa-CCGCGUUau----GUAC- -5'
24451 5' -52.7 NC_005264.1 + 58773 0.67 0.951402
Target:  5'- cACGCGCGgUGgUcGGCGCAGaGgAUGu -3'
miRNA:   3'- -UGCGCGUgACgAaCCGCGUUaUgUAC- -5'
24451 5' -52.7 NC_005264.1 + 87509 0.67 0.951402
Target:  5'- uACGCGCugUuaccgGCacUGGCGCGcgGCAg- -3'
miRNA:   3'- -UGCGCGugA-----CGa-ACCGCGUuaUGUac -5'
24451 5' -52.7 NC_005264.1 + 80487 0.67 0.951402
Target:  5'- gACGCGC-CUGCcUGGCaCAcGUGCGUc -3'
miRNA:   3'- -UGCGCGuGACGaACCGcGU-UAUGUAc -5'
24451 5' -52.7 NC_005264.1 + 18425 0.67 0.947048
Target:  5'- gGCGCGCccuCUcGCUcGGCGCGGggucgaaggACGUGu -3'
miRNA:   3'- -UGCGCGu--GA-CGAaCCGCGUUa--------UGUAC- -5'
24451 5' -52.7 NC_005264.1 + 113352 0.67 0.945237
Target:  5'- gACGCGCAcCUGCUgcccgucgaauacGGCGCGggucaggguuAUGCAg- -3'
miRNA:   3'- -UGCGCGU-GACGAa------------CCGCGU----------UAUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.