miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24451 5' -52.7 NC_005264.1 + 10321 0.66 0.966398
Target:  5'- gACGCGCACUGagcaaGCGCGGaACGa- -3'
miRNA:   3'- -UGCGCGUGACgaac-CGCGUUaUGUac -5'
24451 5' -52.7 NC_005264.1 + 18075 0.66 0.977051
Target:  5'- gGCGCGCGggcauuuaauuCUGCUguuaugccggcagaUGGCGCGAgagGCu-- -3'
miRNA:   3'- -UGCGCGU-----------GACGA--------------ACCGCGUUa--UGuac -5'
24451 5' -52.7 NC_005264.1 + 18131 0.69 0.903095
Target:  5'- gACGUGCuuGCUGUcUGGCGCGAgcgGCu-- -3'
miRNA:   3'- -UGCGCG--UGACGaACCGCGUUa--UGuac -5'
24451 5' -52.7 NC_005264.1 + 18425 0.67 0.947048
Target:  5'- gGCGCGCccuCUcGCUcGGCGCGGggucgaaggACGUGu -3'
miRNA:   3'- -UGCGCGu--GA-CGAaCCGCGUUa--------UGUAC- -5'
24451 5' -52.7 NC_005264.1 + 26951 0.69 0.900471
Target:  5'- cGCGUGCGCaucgcagugGCUUGGCGUAGauuccgggauuugACGUGg -3'
miRNA:   3'- -UGCGCGUGa--------CGAACCGCGUUa------------UGUAC- -5'
24451 5' -52.7 NC_005264.1 + 34511 0.69 0.896461
Target:  5'- gACGCGCAaguaagcaggaUGCgguugggcgUUGGCGgGGUACGUGa -3'
miRNA:   3'- -UGCGCGUg----------ACG---------AACCGCgUUAUGUAC- -5'
24451 5' -52.7 NC_005264.1 + 43667 0.66 0.975257
Target:  5'- -gGCGCGCUGCgcgccGGCGUuaagGCGg- -3'
miRNA:   3'- ugCGCGUGACGaa---CCGCGuua-UGUac -5'
24451 5' -52.7 NC_005264.1 + 48153 0.67 0.942444
Target:  5'- cCGCGCAaucCUGCUcGGCGUGGcUGCAc- -3'
miRNA:   3'- uGCGCGU---GACGAaCCGCGUU-AUGUac -5'
24451 5' -52.7 NC_005264.1 + 50816 0.7 0.85164
Target:  5'- gGCGCGCGCgcagGUUUGcGUGUAG-ACGUGa -3'
miRNA:   3'- -UGCGCGUGa---CGAAC-CGCGUUaUGUAC- -5'
24451 5' -52.7 NC_005264.1 + 55145 0.73 0.689563
Target:  5'- gUGCGCugUGC-UGGCGCA--GCGUa -3'
miRNA:   3'- uGCGCGugACGaACCGCGUuaUGUAc -5'
24451 5' -52.7 NC_005264.1 + 58773 0.67 0.951402
Target:  5'- cACGCGCGgUGgUcGGCGCAGaGgAUGu -3'
miRNA:   3'- -UGCGCGUgACgAaCCGCGUUaUgUAC- -5'
24451 5' -52.7 NC_005264.1 + 59832 0.71 0.799206
Target:  5'- uCGCGUAC-GCcaGcGCGCAAUACGUGg -3'
miRNA:   3'- uGCGCGUGaCGaaC-CGCGUUAUGUAC- -5'
24451 5' -52.7 NC_005264.1 + 59901 0.69 0.90948
Target:  5'- cGCGgGcCAgUGCccugUGGCGCAGaACGUGa -3'
miRNA:   3'- -UGCgC-GUgACGa---ACCGCGUUaUGUAC- -5'
24451 5' -52.7 NC_005264.1 + 62066 0.66 0.97779
Target:  5'- gGCGCGCAUgGCUUGG-GCcc-ACGUa -3'
miRNA:   3'- -UGCGCGUGaCGAACCgCGuuaUGUAc -5'
24451 5' -52.7 NC_005264.1 + 66496 0.67 0.942444
Target:  5'- cCGUGC-CgGCgaUGGCGCGGUACAg- -3'
miRNA:   3'- uGCGCGuGaCGa-ACCGCGUUAUGUac -5'
24451 5' -52.7 NC_005264.1 + 66509 0.68 0.920913
Target:  5'- gGCGCGCucgacgaGCUcGCUUucGCGCAGUACAg- -3'
miRNA:   3'- -UGCGCG-------UGA-CGAAc-CGCGUUAUGUac -5'
24451 5' -52.7 NC_005264.1 + 67377 0.68 0.915612
Target:  5'- cCGCGCucGCUGCgcccgccGGCGCGGUaGCGUa -3'
miRNA:   3'- uGCGCG--UGACGaa-----CCGCGUUA-UGUAc -5'
24451 5' -52.7 NC_005264.1 + 70524 0.68 0.921489
Target:  5'- uAUG-GCGCUGgaUGGCGCGuAUACAg- -3'
miRNA:   3'- -UGCgCGUGACgaACCGCGU-UAUGUac -5'
24451 5' -52.7 NC_005264.1 + 73368 0.72 0.740977
Target:  5'- gACGCGCGgUGCUuuUGGCGCGGcucUGCc-- -3'
miRNA:   3'- -UGCGCGUgACGA--ACCGCGUU---AUGuac -5'
24451 5' -52.7 NC_005264.1 + 74761 1.08 0.006015
Target:  5'- gACGCGCACUGCUUGGCGCAAUACAUGu -3'
miRNA:   3'- -UGCGCGUGACGAACCGCGUUAUGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.