Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24451 | 5' | -52.7 | NC_005264.1 | + | 109994 | 0.66 | 0.972519 |
Target: 5'- uAUGCGCGCaGCUcccGCGUAgcacuGUGCAUGa -3' miRNA: 3'- -UGCGCGUGaCGAac-CGCGU-----UAUGUAC- -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 18425 | 0.67 | 0.947048 |
Target: 5'- gGCGCGCccuCUcGCUcGGCGCGGggucgaaggACGUGu -3' miRNA: 3'- -UGCGCGu--GA-CGAaCCGCGUUa--------UGUAC- -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 80487 | 0.67 | 0.951402 |
Target: 5'- gACGCGC-CUGCcUGGCaCAcGUGCGUc -3' miRNA: 3'- -UGCGCGuGACGaACCGcGU-UAUGUAc -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 87509 | 0.67 | 0.951402 |
Target: 5'- uACGCGCugUuaccgGCacUGGCGCGcgGCAg- -3' miRNA: 3'- -UGCGCGugA-----CGa-ACCGCGUuaUGUac -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 58773 | 0.67 | 0.951402 |
Target: 5'- cACGCGCGgUGgUcGGCGCAGaGgAUGu -3' miRNA: 3'- -UGCGCGUgACgAaCCGCGUUaUgUAC- -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 142804 | 0.67 | 0.959375 |
Target: 5'- gACGUGaCGCUGCacgGGUGCGAgcgcgcCGUGg -3' miRNA: 3'- -UGCGC-GUGACGaa-CCGCGUUau----GUAC- -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 106331 | 0.66 | 0.964389 |
Target: 5'- gGCGCGCcgaugauauuuucugACUgccGCUUGGCGCGGUuagauuucuccGCGUu -3' miRNA: 3'- -UGCGCG---------------UGA---CGAACCGCGUUA-----------UGUAc -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 129348 | 0.66 | 0.966398 |
Target: 5'- gACGCGCACUGagcaaGCGCGGaACGa- -3' miRNA: 3'- -UGCGCGUGACgaac-CGCGUUaUGUac -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 117008 | 0.66 | 0.969568 |
Target: 5'- -gGCGguCUGCgcGGCGCAugacgaGUACAg- -3' miRNA: 3'- ugCGCguGACGaaCCGCGU------UAUGUac -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 66496 | 0.67 | 0.942444 |
Target: 5'- cCGUGC-CgGCgaUGGCGCGGUACAg- -3' miRNA: 3'- uGCGCGuGaCGa-ACCGCGUUAUGUac -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 48153 | 0.67 | 0.942444 |
Target: 5'- cCGCGCAaucCUGCUcGGCGUGGcUGCAc- -3' miRNA: 3'- uGCGCGU---GACGAaCCGCGUU-AUGUac -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 67377 | 0.68 | 0.915612 |
Target: 5'- cCGCGCucGCUGCgcccgccGGCGCGGUaGCGUa -3' miRNA: 3'- uGCGCG--UGACGaa-----CCGCGUUA-UGUAc -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 142277 | 0.73 | 0.689563 |
Target: 5'- cCGCGCGCUgGCagaGCGCGAUACAUa -3' miRNA: 3'- uGCGCGUGA-CGaacCGCGUUAUGUAc -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 73368 | 0.72 | 0.740977 |
Target: 5'- gACGCGCGgUGCUuuUGGCGCGGcucUGCc-- -3' miRNA: 3'- -UGCGCGUgACGA--ACCGCGUU---AUGuac -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 59832 | 0.71 | 0.799206 |
Target: 5'- uCGCGUAC-GCcaGcGCGCAAUACGUGg -3' miRNA: 3'- uGCGCGUGaCGaaC-CGCGUUAUGUAC- -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 86996 | 0.7 | 0.875095 |
Target: 5'- uCGCaGCGCcucgUGGCGCAAUGCAUa -3' miRNA: 3'- uGCG-CGUGacgaACCGCGUUAUGUAc -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 153538 | 0.69 | 0.896461 |
Target: 5'- gACGCGCAaguaagcaggaUGCgguugggcgUUGGCGgGGUACGUGa -3' miRNA: 3'- -UGCGCGUg----------ACG---------AACCGCgUUAUGUAC- -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 26951 | 0.69 | 0.900471 |
Target: 5'- cGCGUGCGCaucgcagugGCUUGGCGUAGauuccgggauuugACGUGg -3' miRNA: 3'- -UGCGCGUGa--------CGAACCGCGUUa------------UGUAC- -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 18131 | 0.69 | 0.903095 |
Target: 5'- gACGUGCuuGCUGUcUGGCGCGAgcgGCu-- -3' miRNA: 3'- -UGCGCG--UGACGaACCGCGUUa--UGuac -5' |
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24451 | 5' | -52.7 | NC_005264.1 | + | 59901 | 0.69 | 0.90948 |
Target: 5'- cGCGgGcCAgUGCccugUGGCGCAGaACGUGa -3' miRNA: 3'- -UGCgC-GUgACGa---ACCGCGUUaUGUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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