miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 2997 0.66 0.801879
Target:  5'- aGCGCCGacuggGCCGGCGGCUcgGCu-- -3'
miRNA:   3'- cCGCGGUca---UGGCUGCCGGaaCGcgc -5'
24453 3' -59.7 NC_005264.1 + 120903 0.66 0.801879
Target:  5'- cGCGgCGGaaaaacuacGCCGAgCGGCUUucUGCGCGg -3'
miRNA:   3'- cCGCgGUCa--------UGGCU-GCCGGA--ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 75330 0.66 0.801879
Target:  5'- cGCGCCAGUGCC---GGUaacaGCGCGu -3'
miRNA:   3'- cCGCGGUCAUGGcugCCGgaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 91415 0.66 0.801879
Target:  5'- aGCGCCGGggcACCGGCGGagucUGUGUc -3'
miRNA:   3'- cCGCGGUCa--UGGCUGCCgga-ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 18557 0.66 0.793199
Target:  5'- cGGCGUCAGUcggagcggcauCCGcCGGCCcaagGCaGCGa -3'
miRNA:   3'- -CCGCGGUCAu----------GGCuGCCGGaa--CG-CGC- -5'
24453 3' -59.7 NC_005264.1 + 71859 0.66 0.793199
Target:  5'- cGGCGgCGGUGuucCgCGACGGCaCgcggGCGCc -3'
miRNA:   3'- -CCGCgGUCAU---G-GCUGCCG-Gaa--CGCGc -5'
24453 3' -59.7 NC_005264.1 + 100638 0.66 0.793199
Target:  5'- cGCGCCcucaaguuuGUAgaGAUGGCCcgacgggagUUGCGCGa -3'
miRNA:   3'- cCGCGGu--------CAUggCUGCCGG---------AACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 47765 0.66 0.793199
Target:  5'- -uCGCUggauagGGUGCCGAUGGCCU-GCaCGa -3'
miRNA:   3'- ccGCGG------UCAUGGCUGCCGGAaCGcGC- -5'
24453 3' -59.7 NC_005264.1 + 101343 0.66 0.793199
Target:  5'- cGGCGCUAGccgagACCGcGgGGCgCgucgGCGCGc -3'
miRNA:   3'- -CCGCGGUCa----UGGC-UgCCG-Gaa--CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 37136 0.66 0.790568
Target:  5'- gGGCaCCAGgcGCCGGCGGUCUcuccauguucgggaUGCaGCa -3'
miRNA:   3'- -CCGcGGUCa-UGGCUGCCGGA--------------ACG-CGc -5'
24453 3' -59.7 NC_005264.1 + 154101 0.66 0.784384
Target:  5'- aGGCGCUuaggaacgggGGgcgaGCCGaaacgGCGGCCacGCGCGc -3'
miRNA:   3'- -CCGCGG----------UCa---UGGC-----UGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 89387 0.66 0.784384
Target:  5'- aGCGCCGGcuagGCCaAgGGCagacUGCGCGa -3'
miRNA:   3'- cCGCGGUCa---UGGcUgCCGga--ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 93269 0.66 0.779033
Target:  5'- uGGCGCCAGgGCCccggcuucaguggagGAauGCCUcaagGCGCu -3'
miRNA:   3'- -CCGCGGUCaUGG---------------CUgcCGGAa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 115970 0.66 0.775441
Target:  5'- cGGCGCCcgacaGGgacGCUGAacgccaGGCCgUGUGCGu -3'
miRNA:   3'- -CCGCGG-----UCa--UGGCUg-----CCGGaACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 100761 0.66 0.775441
Target:  5'- cGGgGuCUAGUAauaCGugGGCCcaagccaUGCGCGc -3'
miRNA:   3'- -CCgC-GGUCAUg--GCugCCGGa------ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 97514 0.66 0.775441
Target:  5'- -uUGCCAGgagcUGCCG-CGGCUgugGCGUGg -3'
miRNA:   3'- ccGCGGUC----AUGGCuGCCGGaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 131992 0.66 0.775441
Target:  5'- --gGCCGGUgGCgGugGGCCgaccgGCGCc -3'
miRNA:   3'- ccgCGGUCA-UGgCugCCGGaa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 132288 0.66 0.770018
Target:  5'- -cCGCCGGUagaagugaucgcgacACCGcgguCGGCCaaacUGCGCGa -3'
miRNA:   3'- ccGCGGUCA---------------UGGCu---GCCGGa---ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 25423 0.66 0.766379
Target:  5'- uGCGCCAGgcgauaCGAuUGGCCUUcGUGCc -3'
miRNA:   3'- cCGCGGUCaug---GCU-GCCGGAA-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 87136 0.66 0.766379
Target:  5'- gGGCGCacCAGUcuucgcGCCGAaagaCGGCgcUGCGCGc -3'
miRNA:   3'- -CCGCG--GUCA------UGGCU----GCCGgaACGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.