miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 45781 0.66 0.766379
Target:  5'- gGGCGCCGG-AgCGGCuauugcggucugGGCCgccGCGCu -3'
miRNA:   3'- -CCGCGGUCaUgGCUG------------CCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 91415 0.66 0.801879
Target:  5'- aGCGCCGGggcACCGGCGGagucUGUGUc -3'
miRNA:   3'- cCGCGGUCa--UGGCUGCCgga-ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 71859 0.66 0.793199
Target:  5'- cGGCGgCGGUGuucCgCGACGGCaCgcggGCGCc -3'
miRNA:   3'- -CCGCgGUCAU---G-GCUGCCG-Gaa--CGCGc -5'
24453 3' -59.7 NC_005264.1 + 18557 0.66 0.793199
Target:  5'- cGGCGUCAGUcggagcggcauCCGcCGGCCcaagGCaGCGa -3'
miRNA:   3'- -CCGCGGUCAu----------GGCuGCCGGaa--CG-CGC- -5'
24453 3' -59.7 NC_005264.1 + 137940 0.67 0.729103
Target:  5'- uGGUGCCGGUAUCGuugcgcgacuucGCGGCC--GCGa- -3'
miRNA:   3'- -CCGCGGUCAUGGC------------UGCCGGaaCGCgc -5'
24453 3' -59.7 NC_005264.1 + 140534 0.67 0.728153
Target:  5'- cGCGCCAGacuacagcuauccUACCGACGaCCcUGCugGCGa -3'
miRNA:   3'- cCGCGGUC-------------AUGGCUGCcGGaACG--CGC- -5'
24453 3' -59.7 NC_005264.1 + 89948 0.67 0.729103
Target:  5'- -cCGCCc--AUCGGCGGCCgcugGCGCGu -3'
miRNA:   3'- ccGCGGucaUGGCUGCCGGaa--CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 146416 0.67 0.729103
Target:  5'- aGgGCgGGUGCUGAUGGCUcgaUGcCGCGg -3'
miRNA:   3'- cCgCGgUCAUGGCUGCCGGa--AC-GCGC- -5'
24453 3' -59.7 NC_005264.1 + 34336 0.67 0.72625
Target:  5'- cGGCGgugaugugccuguuCCAGUAUgaCG-CGGCCaaGCGCGa -3'
miRNA:   3'- -CCGC--------------GGUCAUG--GCuGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 62902 0.67 0.719568
Target:  5'- uGGCaCgAGUccaccagcuuaGCCGcGCGGgCUUGCGCGg -3'
miRNA:   3'- -CCGcGgUCA-----------UGGC-UGCCgGAACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 49618 0.67 0.73856
Target:  5'- gGGCGCUcgguggGGUACCaGGgGGCCaagGUGCu -3'
miRNA:   3'- -CCGCGG------UCAUGG-CUgCCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 120187 0.67 0.729103
Target:  5'- cGGcCGCCAGUcuGCCGGCGcGCgaUGgGgGu -3'
miRNA:   3'- -CC-GCGGUCA--UGGCUGC-CGgaACgCgC- -5'
24453 3' -59.7 NC_005264.1 + 123431 0.67 0.760888
Target:  5'- cGGCGCugagcagcgCAGUgcccccuucGCCGACgucgucaucgucugaGGCCUcuggcUGCGCGa -3'
miRNA:   3'- -CCGCG---------GUCA---------UGGCUG---------------CCGGA-----ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 143386 0.67 0.74793
Target:  5'- cGCGCauauacuGGUGCCGAUGagcGCCUcGCGCc -3'
miRNA:   3'- cCGCGg------UCAUGGCUGC---CGGAaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 148315 0.67 0.74793
Target:  5'- cGCGCCGGUGuUCGuAUGGUCUgagguugcgUGCGCGg -3'
miRNA:   3'- cCGCGGUCAU-GGC-UGCCGGA---------ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 127812 0.67 0.74793
Target:  5'- gGGCGUCG--GCCagGACGGCCa-GCGCu -3'
miRNA:   3'- -CCGCGGUcaUGG--CUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 81616 0.67 0.746997
Target:  5'- uGCGCCAGggacgGCCGAUGcucauauGCCU--CGCGg -3'
miRNA:   3'- cCGCGGUCa----UGGCUGC-------CGGAacGCGC- -5'
24453 3' -59.7 NC_005264.1 + 49480 0.67 0.73856
Target:  5'- cGCGCC-GUAuUCGACGGgCagcaggUGCGCGu -3'
miRNA:   3'- cCGCGGuCAU-GGCUGCCgGa-----ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 154837 0.67 0.73856
Target:  5'- gGGCGCCucUGCCGgccccgcaaugGCGGCCcgUGCaCGg -3'
miRNA:   3'- -CCGCGGucAUGGC-----------UGCCGGa-ACGcGC- -5'
24453 3' -59.7 NC_005264.1 + 44272 0.67 0.708999
Target:  5'- cGCGCCAGUGCguuUGcACGccaacauGCaCUUGCGCGu -3'
miRNA:   3'- cCGCGGUCAUG---GC-UGC-------CG-GAACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.