miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 26381 0.67 0.74793
Target:  5'- cGGCGCCGucuCUGagcGCGGCCUcaGCGCc -3'
miRNA:   3'- -CCGCGGUcauGGC---UGCCGGAa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 108467 0.67 0.729103
Target:  5'- cGCGCgGGgauCCGGUGGCC--GCGCGa -3'
miRNA:   3'- cCGCGgUCau-GGCUGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 135673 0.67 0.729103
Target:  5'- uGCGCCGccGUGaaGACGGCCU-GCaCGg -3'
miRNA:   3'- cCGCGGU--CAUggCUGCCGGAaCGcGC- -5'
24453 3' -59.7 NC_005264.1 + 35811 0.67 0.73856
Target:  5'- gGGCGCCucUGCCGgccccgcaaugGCGGCCcgUGCaCGg -3'
miRNA:   3'- -CCGCGGucAUGGC-----------UGCCGGa-ACGcGC- -5'
24453 3' -59.7 NC_005264.1 + 120705 0.67 0.73856
Target:  5'- cGCGCCGacaaaGCCGGCGGUCggGCGg- -3'
miRNA:   3'- cCGCGGUca---UGGCUGCCGGaaCGCgc -5'
24453 3' -59.7 NC_005264.1 + 8786 0.67 0.74793
Target:  5'- gGGCGUCG--GCCagGACGGCCa-GCGCu -3'
miRNA:   3'- -CCGCGGUcaUGG--CUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 54532 0.67 0.757206
Target:  5'- gGGCauGCCAGUaguguucgccGCCGAcuCGGUCa-GCGCGa -3'
miRNA:   3'- -CCG--CGGUCA----------UGGCU--GCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 4404 0.67 0.760888
Target:  5'- cGGCGCugagcagcgCAGUgcccccuucGCCGACgucgucaucgucugaGGCCUcuggcUGCGCGa -3'
miRNA:   3'- -CCGCG---------GUCA---------UGGCUG---------------CCGGA-----ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 105660 0.67 0.74793
Target:  5'- cGGCGCUu-UGCCGGCGGCagaccaUGCGa- -3'
miRNA:   3'- -CCGCGGucAUGGCUGCCGga----ACGCgc -5'
24453 3' -59.7 NC_005264.1 + 1160 0.67 0.729103
Target:  5'- cGGcCGCCAGUcuGCCGGCGcGCgaUGgGgGu -3'
miRNA:   3'- -CC-GCGGUCA--UGGCUGC-CGgaACgCgC- -5'
24453 3' -59.7 NC_005264.1 + 26551 0.67 0.719568
Target:  5'- uGCGCUgggacGGUAaCGACGGCC--GCGCa -3'
miRNA:   3'- cCGCGG-----UCAUgGCUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 48395 0.67 0.709963
Target:  5'- gGGCGUCGGg--CGGCGGCCagGaGCGg -3'
miRNA:   3'- -CCGCGGUCaugGCUGCCGGaaCgCGC- -5'
24453 3' -59.7 NC_005264.1 + 77975 0.68 0.697387
Target:  5'- cGGCGCCGcgcGUACCGgaGCGGgCgauaccgagcagaaUUGCGUGc -3'
miRNA:   3'- -CCGCGGU---CAUGGC--UGCCgG--------------AACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 65584 0.68 0.690578
Target:  5'- cGUGCCAaGgcCCGGCGGCCacaucUUGCuGCu -3'
miRNA:   3'- cCGCGGU-CauGGCUGCCGG-----AACG-CGc -5'
24453 3' -59.7 NC_005264.1 + 35477 0.68 0.680813
Target:  5'- cGCGagAGUGCCG-CGGCCgauCGCGa -3'
miRNA:   3'- cCGCggUCAUGGCuGCCGGaacGCGC- -5'
24453 3' -59.7 NC_005264.1 + 145157 0.68 0.671011
Target:  5'- -cCGCCAGcgGCUGACGaGCCg-GCGUGa -3'
miRNA:   3'- ccGCGGUCa-UGGCUGC-CGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 104970 0.68 0.671011
Target:  5'- uGGcCGCCGGUGCCG-CcGUCUcugGCGCu -3'
miRNA:   3'- -CC-GCGGUCAUGGCuGcCGGAa--CGCGc -5'
24453 3' -59.7 NC_005264.1 + 75205 0.68 0.661179
Target:  5'- cGCGCCccacgcgGCUGcauCGGCCcUGCGCGg -3'
miRNA:   3'- cCGCGGuca----UGGCu--GCCGGaACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 151403 0.68 0.661179
Target:  5'- uGGCGa-GGaUGCCGGCGGCCg-GCGUc -3'
miRNA:   3'- -CCGCggUC-AUGGCUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 152952 0.68 0.700297
Target:  5'- -cCGCCAGgGCUGGgaaGGCCgugGCGCGc -3'
miRNA:   3'- ccGCGGUCaUGGCUg--CCGGaa-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.