Results 1 - 20 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24453 | 3' | -59.7 | NC_005264.1 | + | 73710 | 1.11 | 0.001183 |
Target: 5'- uGGCGCCAGUACCGACGGCCUUGCGCGg -3' miRNA: 3'- -CCGCGGUCAUGGCUGCCGGAACGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 126127 | 0.8 | 0.156163 |
Target: 5'- cGGCGgCuGaGCCGAUGGCaCUUGCGCGg -3' miRNA: 3'- -CCGCgGuCaUGGCUGCCG-GAACGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 85835 | 0.78 | 0.194424 |
Target: 5'- cGCGCuCAGUACCG--GGUCUUGCGCGc -3' miRNA: 3'- cCGCG-GUCAUGGCugCCGGAACGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 133684 | 0.77 | 0.219057 |
Target: 5'- cGGCGCCAGUAUUGcaugcaagcuauGCGGCCacGCGCu -3' miRNA: 3'- -CCGCGGUCAUGGC------------UGCCGGaaCGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 57866 | 0.77 | 0.229635 |
Target: 5'- aGCGCCAGagacggcgGCaCGGCGGCCaugGCGCGg -3' miRNA: 3'- cCGCGGUCa-------UG-GCUGCCGGaa-CGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 161682 | 0.76 | 0.276307 |
Target: 5'- cGCGCCGGcagACUGGCGGCCggaucgucccgUGCGCc -3' miRNA: 3'- cCGCGGUCa--UGGCUGCCGGa----------ACGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 42656 | 0.76 | 0.276307 |
Target: 5'- cGCGCCGGcagACUGGCGGCCggaucgucccgUGCGCc -3' miRNA: 3'- cCGCGGUCa--UGGCUGCCGGa----------ACGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 36755 | 0.74 | 0.367729 |
Target: 5'- cGGCGCCG--GCCGGCGccgucGCCgcuUGCGCGc -3' miRNA: 3'- -CCGCGGUcaUGGCUGC-----CGGa--ACGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 51097 | 0.74 | 0.352395 |
Target: 5'- cGGuCGCCGGUGCUG-CGGUCUgcucGCGCc -3' miRNA: 3'- -CC-GCGGUCAUGGCuGCCGGAa---CGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 155781 | 0.74 | 0.367729 |
Target: 5'- cGGCGCCG--GCCGGCGccgucGCCgcuUGCGCGc -3' miRNA: 3'- -CCGCGGUcaUGGCUGC-----CGGa--ACGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 64288 | 0.74 | 0.330254 |
Target: 5'- gGGUGCCgAGUAUCG-CGGCCcacaGCGCGu -3' miRNA: 3'- -CCGCGG-UCAUGGCuGCCGGaa--CGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 52180 | 0.74 | 0.367729 |
Target: 5'- cGGCGCUccugauaaauGUGCUGAgGGCCgugggGCGCGg -3' miRNA: 3'- -CCGCGGu---------CAUGGCUgCCGGaa---CGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 67003 | 0.74 | 0.359239 |
Target: 5'- cGGCG--AGUGCugccuggacggagCGGCGGCCUUGCGCa -3' miRNA: 3'- -CCGCggUCAUG-------------GCUGCCGGAACGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 93490 | 0.74 | 0.344899 |
Target: 5'- aGGCGCU---GCUGGCGGCCg-GCGCGu -3' miRNA: 3'- -CCGCGGucaUGGCUGCCGGaaCGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 24200 | 0.74 | 0.352395 |
Target: 5'- uGGCG-CGGUGCCGGUGGCCgaagccaGCGCGc -3' miRNA: 3'- -CCGCgGUCAUGGCUGCCGGaa-----CGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 38029 | 0.73 | 0.383516 |
Target: 5'- gGGCGCCucgguGGUGCaCGACGGUC--GCGUGg -3' miRNA: 3'- -CCGCGG-----UCAUG-GCUGCCGGaaCGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 157056 | 0.73 | 0.383516 |
Target: 5'- gGGCGCCucgguGGUGCaCGACGGUC--GCGUGg -3' miRNA: 3'- -CCGCGG-----UCAUG-GCUGCCGGaaCGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 30844 | 0.73 | 0.399746 |
Target: 5'- uGGCGCCGGUcggcccACCGccacCGGCCUgucGuCGCGa -3' miRNA: 3'- -CCGCGGUCA------UGGCu---GCCGGAa--C-GCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 160454 | 0.72 | 0.468829 |
Target: 5'- cGGCGCCGGgcuccugcgGgCGACGGCCacucgGUGCc -3' miRNA: 3'- -CCGCGGUCa--------UgGCUGCCGGaa---CGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 102773 | 0.72 | 0.44218 |
Target: 5'- gGGCggGCCAGU-UCGGUGGCCUguguUGCGCGa -3' miRNA: 3'- -CCG--CGGUCAuGGCUGCCGGA----ACGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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