miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 73710 1.11 0.001183
Target:  5'- uGGCGCCAGUACCGACGGCCUUGCGCGg -3'
miRNA:   3'- -CCGCGGUCAUGGCUGCCGGAACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 126127 0.8 0.156163
Target:  5'- cGGCGgCuGaGCCGAUGGCaCUUGCGCGg -3'
miRNA:   3'- -CCGCgGuCaUGGCUGCCG-GAACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 85835 0.78 0.194424
Target:  5'- cGCGCuCAGUACCG--GGUCUUGCGCGc -3'
miRNA:   3'- cCGCG-GUCAUGGCugCCGGAACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 133684 0.77 0.219057
Target:  5'- cGGCGCCAGUAUUGcaugcaagcuauGCGGCCacGCGCu -3'
miRNA:   3'- -CCGCGGUCAUGGC------------UGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 57866 0.77 0.229635
Target:  5'- aGCGCCAGagacggcgGCaCGGCGGCCaugGCGCGg -3'
miRNA:   3'- cCGCGGUCa-------UG-GCUGCCGGaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 42656 0.76 0.276307
Target:  5'- cGCGCCGGcagACUGGCGGCCggaucgucccgUGCGCc -3'
miRNA:   3'- cCGCGGUCa--UGGCUGCCGGa----------ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 161682 0.76 0.276307
Target:  5'- cGCGCCGGcagACUGGCGGCCggaucgucccgUGCGCc -3'
miRNA:   3'- cCGCGGUCa--UGGCUGCCGGa----------ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 64288 0.74 0.330254
Target:  5'- gGGUGCCgAGUAUCG-CGGCCcacaGCGCGu -3'
miRNA:   3'- -CCGCGG-UCAUGGCuGCCGGaa--CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 93490 0.74 0.344899
Target:  5'- aGGCGCU---GCUGGCGGCCg-GCGCGu -3'
miRNA:   3'- -CCGCGGucaUGGCUGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 24200 0.74 0.352395
Target:  5'- uGGCG-CGGUGCCGGUGGCCgaagccaGCGCGc -3'
miRNA:   3'- -CCGCgGUCAUGGCUGCCGGaa-----CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 51097 0.74 0.352395
Target:  5'- cGGuCGCCGGUGCUG-CGGUCUgcucGCGCc -3'
miRNA:   3'- -CC-GCGGUCAUGGCuGCCGGAa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 67003 0.74 0.359239
Target:  5'- cGGCG--AGUGCugccuggacggagCGGCGGCCUUGCGCa -3'
miRNA:   3'- -CCGCggUCAUG-------------GCUGCCGGAACGCGc -5'
24453 3' -59.7 NC_005264.1 + 36755 0.74 0.367729
Target:  5'- cGGCGCCG--GCCGGCGccgucGCCgcuUGCGCGc -3'
miRNA:   3'- -CCGCGGUcaUGGCUGC-----CGGa--ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 155781 0.74 0.367729
Target:  5'- cGGCGCCG--GCCGGCGccgucGCCgcuUGCGCGc -3'
miRNA:   3'- -CCGCGGUcaUGGCUGC-----CGGa--ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 52180 0.74 0.367729
Target:  5'- cGGCGCUccugauaaauGUGCUGAgGGCCgugggGCGCGg -3'
miRNA:   3'- -CCGCGGu---------CAUGGCUgCCGGaa---CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 38029 0.73 0.383516
Target:  5'- gGGCGCCucgguGGUGCaCGACGGUC--GCGUGg -3'
miRNA:   3'- -CCGCGG-----UCAUG-GCUGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 157056 0.73 0.383516
Target:  5'- gGGCGCCucgguGGUGCaCGACGGUC--GCGUGg -3'
miRNA:   3'- -CCGCGG-----UCAUG-GCUGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 30844 0.73 0.399746
Target:  5'- uGGCGCCGGUcggcccACCGccacCGGCCUgucGuCGCGa -3'
miRNA:   3'- -CCGCGGUCA------UGGCu---GCCGGAa--C-GCGC- -5'
24453 3' -59.7 NC_005264.1 + 102773 0.72 0.44218
Target:  5'- gGGCggGCCAGU-UCGGUGGCCUguguUGCGCGa -3'
miRNA:   3'- -CCG--CGGUCAuGGCUGCCGGA----ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 34990 0.72 0.44218
Target:  5'- cGCGCCGGguucuagACCGcCGGCCgc-CGCGg -3'
miRNA:   3'- cCGCGGUCa------UGGCuGCCGGaacGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.