miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 129516 0.72 0.459853
Target:  5'- cGGCGCCGGaGgCGACGGaaccaCUgcggGCGUGg -3'
miRNA:   3'- -CCGCGGUCaUgGCUGCCg----GAa---CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 160454 0.72 0.468829
Target:  5'- cGGCGCCGGgcuccugcgGgCGACGGCCacucgGUGCc -3'
miRNA:   3'- -CCGCGGUCa--------UgGCUGCCGGaa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 41427 0.72 0.468829
Target:  5'- cGGCGCCGGgcuccugcgGgCGACGGCCacucgGUGCc -3'
miRNA:   3'- -CCGCGGUCa--------UgGCUGCCGGaa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 28152 0.71 0.496277
Target:  5'- -uCGCCAGUGCgGGCGGCuCUUGaacgGCa -3'
miRNA:   3'- ccGCGGUCAUGgCUGCCG-GAACg---CGc -5'
24453 3' -59.7 NC_005264.1 + 131681 0.71 0.499992
Target:  5'- uGGCGgCAcgucggcucgcaagcGUAgCGugGGCC-UGCGCGg -3'
miRNA:   3'- -CCGCgGU---------------CAUgGCugCCGGaACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 19425 0.71 0.505588
Target:  5'- aGGCGCCGGgugugGCCG-CGGg---GCGCGg -3'
miRNA:   3'- -CCGCGGUCa----UGGCuGCCggaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 104840 0.7 0.532993
Target:  5'- -cCGCCGGgGCCGcugagccACGGCCgccGCGCGg -3'
miRNA:   3'- ccGCGGUCaUGGC-------UGCCGGaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 75104 0.7 0.533948
Target:  5'- aGGCGCCGGcGCCGA--GCUgggGCGCa -3'
miRNA:   3'- -CCGCGGUCaUGGCUgcCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 59711 0.7 0.543529
Target:  5'- cGCGCCGc-GCCGGCGGCUaccGCGCc -3'
miRNA:   3'- cCGCGGUcaUGGCUGCCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 5978 0.7 0.543529
Target:  5'- aGGaauGCCAGUACauuagcagcgCGGCGGUCgcugUGCGCa -3'
miRNA:   3'- -CCg--CGGUCAUG----------GCUGCCGGa---ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 126294 0.7 0.553165
Target:  5'- cGGCGCCAGgacgaagaCGGCggGGCCUaGCGaCGg -3'
miRNA:   3'- -CCGCGGUCaug-----GCUG--CCGGAaCGC-GC- -5'
24453 3' -59.7 NC_005264.1 + 7267 0.7 0.553165
Target:  5'- cGGCGCCAGgacgaagaCGGCggGGCCUaGCGaCGg -3'
miRNA:   3'- -CCGCGGUCaug-----GCUG--CCGGAaCGC-GC- -5'
24453 3' -59.7 NC_005264.1 + 95118 0.7 0.559941
Target:  5'- aGGCGCCacgucgaucaauucGGaaaUACgGACGGCCcggGCGCa -3'
miRNA:   3'- -CCGCGG--------------UC---AUGgCUGCCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 134743 0.7 0.561881
Target:  5'- aGGCGCCGGUgcgcaauaacGCCugacuuugacgaaGACGGUCgcaugGCGCa -3'
miRNA:   3'- -CCGCGGUCA----------UGG-------------CUGCCGGaa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 126307 0.7 0.562852
Target:  5'- gGGCGCgCG--GCCGAUGGCUccUGCGCc -3'
miRNA:   3'- -CCGCG-GUcaUGGCUGCCGGa-ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 125704 0.7 0.562852
Target:  5'- uGGCGCCAGcagcgagGCCGAgaCGGCCgccuCGCc -3'
miRNA:   3'- -CCGCGGUCa------UGGCU--GCCGGaac-GCGc -5'
24453 3' -59.7 NC_005264.1 + 6677 0.7 0.562852
Target:  5'- uGGCGCCAGcagcgagGCCGAgaCGGCCgccuCGCc -3'
miRNA:   3'- -CCGCGGUCa------UGGCU--GCCGGaac-GCGc -5'
24453 3' -59.7 NC_005264.1 + 113240 0.7 0.562852
Target:  5'- aGCGCCccccgucguccuGGUcGCCGGCGGCg-UGCGCc -3'
miRNA:   3'- cCGCGG------------UCA-UGGCUGCCGgaACGCGc -5'
24453 3' -59.7 NC_005264.1 + 84950 0.7 0.572584
Target:  5'- uGGCGCCgGGUGCuCGcuuGCGGCCaggcUGCuGCGu -3'
miRNA:   3'- -CCGCGG-UCAUG-GC---UGCCGGa---ACG-CGC- -5'
24453 3' -59.7 NC_005264.1 + 92186 0.7 0.572584
Target:  5'- cGGCGCCGcgGCCacgguguuguuGACGcGCCUgcGCGCGa -3'
miRNA:   3'- -CCGCGGUcaUGG-----------CUGC-CGGAa-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.