Results 41 - 60 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24453 | 3' | -59.7 | NC_005264.1 | + | 7065 | 0.7 | 0.572584 |
Target: 5'- cGGCGCCG--GCCGGCG-CCgucGCGCu -3' miRNA: 3'- -CCGCGGUcaUGGCUGCcGGaa-CGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 84950 | 0.7 | 0.572584 |
Target: 5'- uGGCGCCgGGUGCuCGcuuGCGGCCaggcUGCuGCGu -3' miRNA: 3'- -CCGCGG-UCAUG-GC---UGCCGGa---ACG-CGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 48348 | 0.7 | 0.572584 |
Target: 5'- uGGCGCac--GCCauGGCGGCCUcguUGCGCa -3' miRNA: 3'- -CCGCGgucaUGG--CUGCCGGA---ACGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 68315 | 0.7 | 0.582355 |
Target: 5'- cGGCGCCGcugcccucccacGUgGCCGACGGCUgcacuaaCGCGa -3' miRNA: 3'- -CCGCGGU------------CA-UGGCUGCCGGaac----GCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 121996 | 0.69 | 0.59216 |
Target: 5'- uGCGCUAG-AUCGGCGGCCggccauaGCGgGa -3' miRNA: 3'- cCGCGGUCaUGGCUGCCGGaa-----CGCgC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 78626 | 0.69 | 0.59216 |
Target: 5'- cGGCGCCucuucuGUuaaccGCCGcgGCGGCCcUGUGCc -3' miRNA: 3'- -CCGCGGu-----CA-----UGGC--UGCCGGaACGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 79718 | 0.69 | 0.601991 |
Target: 5'- cGCGCCu---CCG-CGGCCUUgGCGCc -3' miRNA: 3'- cCGCGGucauGGCuGCCGGAA-CGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 55146 | 0.69 | 0.611844 |
Target: 5'- uGCGCU-GUGCUGgcgcagcguauGCGGCCUcuggGCGCGg -3' miRNA: 3'- cCGCGGuCAUGGC-----------UGCCGGAa---CGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 79594 | 0.69 | 0.611844 |
Target: 5'- cGCGCCAGcGCaucagCGGCGGCCUaGaCGCc -3' miRNA: 3'- cCGCGGUCaUG-----GCUGCCGGAaC-GCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 4602 | 0.69 | 0.631584 |
Target: 5'- -cCGCCAGcGCCGcgGCGGCgUagGCGCGu -3' miRNA: 3'- ccGCGGUCaUGGC--UGCCGgAa-CGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 123629 | 0.69 | 0.631584 |
Target: 5'- -cCGCCAGcGCCGcgGCGGCgUagGCGCGu -3' miRNA: 3'- ccGCGGUCaUGGC--UGCCGgAa-CGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 116983 | 0.69 | 0.631584 |
Target: 5'- cGGCGCgCAG-ACUcgaagucuugggGGCGGUC-UGCGCGg -3' miRNA: 3'- -CCGCG-GUCaUGG------------CUGCCGGaACGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 30214 | 0.69 | 0.631584 |
Target: 5'- cGCGUCGGUAacauagguuuCCG-CGGCCa-GCGCGg -3' miRNA: 3'- cCGCGGUCAU----------GGCuGCCGGaaCGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 83123 | 0.69 | 0.641459 |
Target: 5'- gGGCGCCAagGCCG-CGGag--GCGCGu -3' miRNA: 3'- -CCGCGGUcaUGGCuGCCggaaCGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 94401 | 0.69 | 0.641459 |
Target: 5'- cGCGCgCAG-ACCG-CGGCgCggacUGCGCGa -3' miRNA: 3'- cCGCG-GUCaUGGCuGCCG-Ga---ACGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 114636 | 0.69 | 0.641459 |
Target: 5'- aGCGUCaccacGGUGCCaGACGGCCguaGCGUc -3' miRNA: 3'- cCGCGG-----UCAUGG-CUGCCGGaa-CGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 75205 | 0.68 | 0.661179 |
Target: 5'- cGCGCCccacgcgGCUGcauCGGCCcUGCGCGg -3' miRNA: 3'- cCGCGGuca----UGGCu--GCCGGaACGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 151403 | 0.68 | 0.661179 |
Target: 5'- uGGCGa-GGaUGCCGGCGGCCg-GCGUc -3' miRNA: 3'- -CCGCggUC-AUGGCUGCCGGaaCGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 31026 | 0.68 | 0.661179 |
Target: 5'- gGGCGaCGGUGCCGccuaGCGGUCgUGCGg- -3' miRNA: 3'- -CCGCgGUCAUGGC----UGCCGGaACGCgc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 32376 | 0.68 | 0.661179 |
Target: 5'- uGGCGa-GGaUGCCGGCGGCCg-GCGUc -3' miRNA: 3'- -CCGCggUC-AUGGCUGCCGGaaCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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