miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 88225 0.66 0.766379
Target:  5'- aGCGCCAGggggaaCGugGgGUCagGCGCGg -3'
miRNA:   3'- cCGCGGUCaug---GCugC-CGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 45781 0.66 0.766379
Target:  5'- gGGCGCCGG-AgCGGCuauugcggucugGGCCgccGCGCu -3'
miRNA:   3'- -CCGCGGUCaUgGCUG------------CCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 25423 0.66 0.766379
Target:  5'- uGCGCCAGgcgauaCGAuUGGCCUUcGUGCc -3'
miRNA:   3'- cCGCGGUCaug---GCU-GCCGGAA-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 150182 0.66 0.762723
Target:  5'- uGCuGCCGGccgGCCuuaauagccacauuGGCGGCCUcgcgguauagucuUGCGCGg -3'
miRNA:   3'- cCG-CGGUCa--UGG--------------CUGCCGGA-------------ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 4404 0.67 0.760888
Target:  5'- cGGCGCugagcagcgCAGUgcccccuucGCCGACgucgucaucgucugaGGCCUcuggcUGCGCGa -3'
miRNA:   3'- -CCGCG---------GUCA---------UGGCUG---------------CCGGA-----ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 123431 0.67 0.760888
Target:  5'- cGGCGCugagcagcgCAGUgcccccuucGCCGACgucgucaucgucugaGGCCUcuggcUGCGCGa -3'
miRNA:   3'- -CCGCG---------GUCA---------UGGCUG---------------CCGGA-----ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 54532 0.67 0.757206
Target:  5'- gGGCauGCCAGUaguguucgccGCCGAcuCGGUCa-GCGCGa -3'
miRNA:   3'- -CCG--CGGUCA----------UGGCU--GCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 8786 0.67 0.74793
Target:  5'- gGGCGUCG--GCCagGACGGCCa-GCGCu -3'
miRNA:   3'- -CCGCGGUcaUGG--CUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 148315 0.67 0.74793
Target:  5'- cGCGCCGGUGuUCGuAUGGUCUgagguugcgUGCGCGg -3'
miRNA:   3'- cCGCGGUCAU-GGC-UGCCGGA---------ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 143386 0.67 0.74793
Target:  5'- cGCGCauauacuGGUGCCGAUGagcGCCUcGCGCc -3'
miRNA:   3'- cCGCGg------UCAUGGCUGC---CGGAaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 26381 0.67 0.74793
Target:  5'- cGGCGCCGucuCUGagcGCGGCCUcaGCGCc -3'
miRNA:   3'- -CCGCGGUcauGGC---UGCCGGAa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 127812 0.67 0.74793
Target:  5'- gGGCGUCG--GCCagGACGGCCa-GCGCu -3'
miRNA:   3'- -CCGCGGUcaUGG--CUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 105660 0.67 0.74793
Target:  5'- cGGCGCUu-UGCCGGCGGCagaccaUGCGa- -3'
miRNA:   3'- -CCGCGGucAUGGCUGCCGga----ACGCgc -5'
24453 3' -59.7 NC_005264.1 + 81616 0.67 0.746997
Target:  5'- uGCGCCAGggacgGCCGAUGcucauauGCCU--CGCGg -3'
miRNA:   3'- cCGCGGUCa----UGGCUGC-------CGGAacGCGC- -5'
24453 3' -59.7 NC_005264.1 + 120705 0.67 0.73856
Target:  5'- cGCGCCGacaaaGCCGGCGGUCggGCGg- -3'
miRNA:   3'- cCGCGGUca---UGGCUGCCGGaaCGCgc -5'
24453 3' -59.7 NC_005264.1 + 35811 0.67 0.73856
Target:  5'- gGGCGCCucUGCCGgccccgcaaugGCGGCCcgUGCaCGg -3'
miRNA:   3'- -CCGCGGucAUGGC-----------UGCCGGa-ACGcGC- -5'
24453 3' -59.7 NC_005264.1 + 154837 0.67 0.73856
Target:  5'- gGGCGCCucUGCCGgccccgcaaugGCGGCCcgUGCaCGg -3'
miRNA:   3'- -CCGCGGucAUGGC-----------UGCCGGa-ACGcGC- -5'
24453 3' -59.7 NC_005264.1 + 49480 0.67 0.73856
Target:  5'- cGCGCC-GUAuUCGACGGgCagcaggUGCGCGu -3'
miRNA:   3'- cCGCGGuCAU-GGCUGCCgGa-----ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 49618 0.67 0.73856
Target:  5'- gGGCGCUcgguggGGUACCaGGgGGCCaagGUGCu -3'
miRNA:   3'- -CCGCGG------UCAUGG-CUgCCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 137940 0.67 0.729103
Target:  5'- uGGUGCCGGUAUCGuugcgcgacuucGCGGCC--GCGa- -3'
miRNA:   3'- -CCGCGGUCAUGGC------------UGCCGGaaCGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.