miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 1160 0.67 0.729103
Target:  5'- cGGcCGCCAGUcuGCCGGCGcGCgaUGgGgGu -3'
miRNA:   3'- -CC-GCGGUCA--UGGCUGC-CGgaACgCgC- -5'
24453 3' -59.7 NC_005264.1 + 146416 0.67 0.729103
Target:  5'- aGgGCgGGUGCUGAUGGCUcgaUGcCGCGg -3'
miRNA:   3'- cCgCGgUCAUGGCUGCCGGa--AC-GCGC- -5'
24453 3' -59.7 NC_005264.1 + 108467 0.67 0.729103
Target:  5'- cGCGCgGGgauCCGGUGGCC--GCGCGa -3'
miRNA:   3'- cCGCGgUCau-GGCUGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 135673 0.67 0.729103
Target:  5'- uGCGCCGccGUGaaGACGGCCU-GCaCGg -3'
miRNA:   3'- cCGCGGU--CAUggCUGCCGGAaCGcGC- -5'
24453 3' -59.7 NC_005264.1 + 137940 0.67 0.729103
Target:  5'- uGGUGCCGGUAUCGuugcgcgacuucGCGGCC--GCGa- -3'
miRNA:   3'- -CCGCGGUCAUGGC------------UGCCGGaaCGCgc -5'
24453 3' -59.7 NC_005264.1 + 120187 0.67 0.729103
Target:  5'- cGGcCGCCAGUcuGCCGGCGcGCgaUGgGgGu -3'
miRNA:   3'- -CC-GCGGUCA--UGGCUGC-CGgaACgCgC- -5'
24453 3' -59.7 NC_005264.1 + 140534 0.67 0.728153
Target:  5'- cGCGCCAGacuacagcuauccUACCGACGaCCcUGCugGCGa -3'
miRNA:   3'- cCGCGGUC-------------AUGGCUGCcGGaACG--CGC- -5'
24453 3' -59.7 NC_005264.1 + 34336 0.67 0.72625
Target:  5'- cGGCGgugaugugccuguuCCAGUAUgaCG-CGGCCaaGCGCGa -3'
miRNA:   3'- -CCGC--------------GGUCAUG--GCuGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 26551 0.67 0.719568
Target:  5'- uGCGCUgggacGGUAaCGACGGCC--GCGCa -3'
miRNA:   3'- cCGCGG-----UCAUgGCUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 62902 0.67 0.719568
Target:  5'- uGGCaCgAGUccaccagcuuaGCCGcGCGGgCUUGCGCGg -3'
miRNA:   3'- -CCGcGgUCA-----------UGGC-UGCCgGAACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 48395 0.67 0.709963
Target:  5'- gGGCGUCGGg--CGGCGGCCagGaGCGg -3'
miRNA:   3'- -CCGCGGUCaugGCUGCCGGaaCgCGC- -5'
24453 3' -59.7 NC_005264.1 + 44272 0.67 0.708999
Target:  5'- cGCGCCAGUGCguuUGcACGccaacauGCaCUUGCGCGu -3'
miRNA:   3'- cCGCGGUCAUG---GC-UGC-------CG-GAACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 152952 0.68 0.700297
Target:  5'- -cCGCCAGgGCUGGgaaGGCCgugGCGCGc -3'
miRNA:   3'- ccGCGGUCaUGGCUg--CCGGaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 68994 0.68 0.700297
Target:  5'- cGgGCCAGUgGCCcGCGGCCcUGuCGCc -3'
miRNA:   3'- cCgCGGUCA-UGGcUGCCGGaAC-GCGc -5'
24453 3' -59.7 NC_005264.1 + 138658 0.68 0.700297
Target:  5'- cGCGCCAGacuuUACCGaccGCGGCCgcaGCaGCc -3'
miRNA:   3'- cCGCGGUC----AUGGC---UGCCGGaa-CG-CGc -5'
24453 3' -59.7 NC_005264.1 + 103127 0.68 0.700297
Target:  5'- cGGCG-CGGUaGCCGcCGGCgCggcGCGCGg -3'
miRNA:   3'- -CCGCgGUCA-UGGCuGCCG-Gaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 77975 0.68 0.697387
Target:  5'- cGGCGCCGcgcGUACCGgaGCGGgCgauaccgagcagaaUUGCGUGc -3'
miRNA:   3'- -CCGCGGU---CAUGGC--UGCCgG--------------AACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 65584 0.68 0.690578
Target:  5'- cGUGCCAaGgcCCGGCGGCCacaucUUGCuGCu -3'
miRNA:   3'- cCGCGGU-CauGGCUGCCGG-----AACG-CGc -5'
24453 3' -59.7 NC_005264.1 + 35477 0.68 0.680813
Target:  5'- cGCGagAGUGCCG-CGGCCgauCGCGa -3'
miRNA:   3'- cCGCggUCAUGGCuGCCGGaacGCGC- -5'
24453 3' -59.7 NC_005264.1 + 130264 0.68 0.680813
Target:  5'- gGGCGCgGGUGCgcgacguugCGGCGGCUac-CGCGg -3'
miRNA:   3'- -CCGCGgUCAUG---------GCUGCCGGaacGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.