miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 81799 0.68 0.680813
Target:  5'- cGCGCCAGUGaggguaGACGGCggguagGCGCc -3'
miRNA:   3'- cCGCGGUCAUgg----CUGCCGgaa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 86497 0.68 0.680813
Target:  5'- uGCGCgCAGUcGCCGcGCGGCCaacuuucgUGCGuCGa -3'
miRNA:   3'- cCGCG-GUCA-UGGC-UGCCGGa-------ACGC-GC- -5'
24453 3' -59.7 NC_005264.1 + 130264 0.68 0.680813
Target:  5'- gGGCGCgGGUGCgcgacguugCGGCGGCUac-CGCGg -3'
miRNA:   3'- -CCGCGgUCAUG---------GCUGCCGGaacGCGC- -5'
24453 3' -59.7 NC_005264.1 + 98664 0.68 0.680813
Target:  5'- uGCucgacCCAGUGCUGGCGGCgCUUGCa-- -3'
miRNA:   3'- cCGc----GGUCAUGGCUGCCG-GAACGcgc -5'
24453 3' -59.7 NC_005264.1 + 129008 0.68 0.678855
Target:  5'- cGGCGCgcaggggaauagcuaCAGccuUGCCGGCGaGCCgguccaaagcggcgUGCGCGg -3'
miRNA:   3'- -CCGCG---------------GUC---AUGGCUGC-CGGa-------------ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 104970 0.68 0.671011
Target:  5'- uGGcCGCCGGUGCCG-CcGUCUcugGCGCu -3'
miRNA:   3'- -CC-GCGGUCAUGGCuGcCGGAa--CGCGc -5'
24453 3' -59.7 NC_005264.1 + 145157 0.68 0.671011
Target:  5'- -cCGCCAGcgGCUGACGaGCCg-GCGUGa -3'
miRNA:   3'- ccGCGGUCa-UGGCUGC-CGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 106031 0.68 0.671011
Target:  5'- uGCGCCGccgACCGAcacCGGCgaUGCGCc -3'
miRNA:   3'- cCGCGGUca-UGGCU---GCCGgaACGCGc -5'
24453 3' -59.7 NC_005264.1 + 150053 0.68 0.661179
Target:  5'- gGGCGaCGGUGCCGccuaGCGGUCgUGCGg- -3'
miRNA:   3'- -CCGCgGUCAUGGC----UGCCGGaACGCgc -5'
24453 3' -59.7 NC_005264.1 + 151403 0.68 0.661179
Target:  5'- uGGCGa-GGaUGCCGGCGGCCg-GCGUc -3'
miRNA:   3'- -CCGCggUC-AUGGCUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 75205 0.68 0.661179
Target:  5'- cGCGCCccacgcgGCUGcauCGGCCcUGCGCGg -3'
miRNA:   3'- cCGCGGuca----UGGCu--GCCGGaACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 31026 0.68 0.661179
Target:  5'- gGGCGaCGGUGCCGccuaGCGGUCgUGCGg- -3'
miRNA:   3'- -CCGCgGUCAUGGC----UGCCGGaACGCgc -5'
24453 3' -59.7 NC_005264.1 + 32376 0.68 0.661179
Target:  5'- uGGCGa-GGaUGCCGGCGGCCg-GCGUc -3'
miRNA:   3'- -CCGCggUC-AUGGCUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 114636 0.69 0.641459
Target:  5'- aGCGUCaccacGGUGCCaGACGGCCguaGCGUc -3'
miRNA:   3'- cCGCGG-----UCAUGG-CUGCCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 83123 0.69 0.641459
Target:  5'- gGGCGCCAagGCCG-CGGag--GCGCGu -3'
miRNA:   3'- -CCGCGGUcaUGGCuGCCggaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 94401 0.69 0.641459
Target:  5'- cGCGCgCAG-ACCG-CGGCgCggacUGCGCGa -3'
miRNA:   3'- cCGCG-GUCaUGGCuGCCG-Ga---ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 30214 0.69 0.631584
Target:  5'- cGCGUCGGUAacauagguuuCCG-CGGCCa-GCGCGg -3'
miRNA:   3'- cCGCGGUCAU----------GGCuGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 116983 0.69 0.631584
Target:  5'- cGGCGCgCAG-ACUcgaagucuugggGGCGGUC-UGCGCGg -3'
miRNA:   3'- -CCGCG-GUCaUGG------------CUGCCGGaACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 123629 0.69 0.631584
Target:  5'- -cCGCCAGcGCCGcgGCGGCgUagGCGCGu -3'
miRNA:   3'- ccGCGGUCaUGGC--UGCCGgAa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 4602 0.69 0.631584
Target:  5'- -cCGCCAGcGCCGcgGCGGCgUagGCGCGu -3'
miRNA:   3'- ccGCGGUCaUGGC--UGCCGgAa-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.