miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 1160 0.67 0.729103
Target:  5'- cGGcCGCCAGUcuGCCGGCGcGCgaUGgGgGu -3'
miRNA:   3'- -CC-GCGGUCA--UGGCUGC-CGgaACgCgC- -5'
24453 3' -59.7 NC_005264.1 + 2997 0.66 0.801879
Target:  5'- aGCGCCGacuggGCCGGCGGCUcgGCu-- -3'
miRNA:   3'- cCGCGGUca---UGGCUGCCGGaaCGcgc -5'
24453 3' -59.7 NC_005264.1 + 4404 0.67 0.760888
Target:  5'- cGGCGCugagcagcgCAGUgcccccuucGCCGACgucgucaucgucugaGGCCUcuggcUGCGCGa -3'
miRNA:   3'- -CCGCG---------GUCA---------UGGCUG---------------CCGGA-----ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 4602 0.69 0.631584
Target:  5'- -cCGCCAGcGCCGcgGCGGCgUagGCGCGu -3'
miRNA:   3'- ccGCGGUCaUGGC--UGCCGgAa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 5978 0.7 0.543529
Target:  5'- aGGaauGCCAGUACauuagcagcgCGGCGGUCgcugUGCGCa -3'
miRNA:   3'- -CCg--CGGUCAUG----------GCUGCCGGa---ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 6677 0.7 0.562852
Target:  5'- uGGCGCCAGcagcgagGCCGAgaCGGCCgccuCGCc -3'
miRNA:   3'- -CCGCGGUCa------UGGCU--GCCGGaac-GCGc -5'
24453 3' -59.7 NC_005264.1 + 7065 0.7 0.572584
Target:  5'- cGGCGCCG--GCCGGCG-CCgucGCGCu -3'
miRNA:   3'- -CCGCGGUcaUGGCUGCcGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 7267 0.7 0.553165
Target:  5'- cGGCGCCAGgacgaagaCGGCggGGCCUaGCGaCGg -3'
miRNA:   3'- -CCGCGGUCaug-----GCUG--CCGGAaCGC-GC- -5'
24453 3' -59.7 NC_005264.1 + 8786 0.67 0.74793
Target:  5'- gGGCGUCG--GCCagGACGGCCa-GCGCu -3'
miRNA:   3'- -CCGCGGUcaUGG--CUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 18557 0.66 0.793199
Target:  5'- cGGCGUCAGUcggagcggcauCCGcCGGCCcaagGCaGCGa -3'
miRNA:   3'- -CCGCGGUCAu----------GGCuGCCGGaa--CG-CGC- -5'
24453 3' -59.7 NC_005264.1 + 19425 0.71 0.505588
Target:  5'- aGGCGCCGGgugugGCCG-CGGg---GCGCGg -3'
miRNA:   3'- -CCGCGGUCa----UGGCuGCCggaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 24200 0.74 0.352395
Target:  5'- uGGCG-CGGUGCCGGUGGCCgaagccaGCGCGc -3'
miRNA:   3'- -CCGCgGUCAUGGCUGCCGGaa-----CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 25423 0.66 0.766379
Target:  5'- uGCGCCAGgcgauaCGAuUGGCCUUcGUGCc -3'
miRNA:   3'- cCGCGGUCaug---GCU-GCCGGAA-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 26381 0.67 0.74793
Target:  5'- cGGCGCCGucuCUGagcGCGGCCUcaGCGCc -3'
miRNA:   3'- -CCGCGGUcauGGC---UGCCGGAa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 26551 0.67 0.719568
Target:  5'- uGCGCUgggacGGUAaCGACGGCC--GCGCa -3'
miRNA:   3'- cCGCGG-----UCAUgGCUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 28152 0.71 0.496277
Target:  5'- -uCGCCAGUGCgGGCGGCuCUUGaacgGCa -3'
miRNA:   3'- ccGCGGUCAUGgCUGCCG-GAACg---CGc -5'
24453 3' -59.7 NC_005264.1 + 29137 0.66 0.766379
Target:  5'- aGGCagcaCCAGUGCgCGGCGGCaaggacCGCGg -3'
miRNA:   3'- -CCGc---GGUCAUG-GCUGCCGgaac--GCGC- -5'
24453 3' -59.7 NC_005264.1 + 30214 0.69 0.631584
Target:  5'- cGCGUCGGUAacauagguuuCCG-CGGCCa-GCGCGg -3'
miRNA:   3'- cCGCGGUCAU----------GGCuGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 30844 0.73 0.399746
Target:  5'- uGGCGCCGGUcggcccACCGccacCGGCCUgucGuCGCGa -3'
miRNA:   3'- -CCGCGGUCA------UGGCu---GCCGGAa--C-GCGC- -5'
24453 3' -59.7 NC_005264.1 + 31026 0.68 0.661179
Target:  5'- gGGCGaCGGUGCCGccuaGCGGUCgUGCGg- -3'
miRNA:   3'- -CCGCgGUCAUGGC----UGCCGGaACGCgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.