miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 32376 0.68 0.661179
Target:  5'- uGGCGa-GGaUGCCGGCGGCCg-GCGUc -3'
miRNA:   3'- -CCGCggUC-AUGGCUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 34336 0.67 0.72625
Target:  5'- cGGCGgugaugugccuguuCCAGUAUgaCG-CGGCCaaGCGCGa -3'
miRNA:   3'- -CCGC--------------GGUCAUG--GCuGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 34990 0.72 0.44218
Target:  5'- cGCGCCGGguucuagACCGcCGGCCgc-CGCGg -3'
miRNA:   3'- cCGCGGUCa------UGGCuGCCGGaacGCGC- -5'
24453 3' -59.7 NC_005264.1 + 35477 0.68 0.680813
Target:  5'- cGCGagAGUGCCG-CGGCCgauCGCGa -3'
miRNA:   3'- cCGCggUCAUGGCuGCCGGaacGCGC- -5'
24453 3' -59.7 NC_005264.1 + 35811 0.67 0.73856
Target:  5'- gGGCGCCucUGCCGgccccgcaaugGCGGCCcgUGCaCGg -3'
miRNA:   3'- -CCGCGGucAUGGC-----------UGCCGGa-ACGcGC- -5'
24453 3' -59.7 NC_005264.1 + 36755 0.74 0.367729
Target:  5'- cGGCGCCG--GCCGGCGccgucGCCgcuUGCGCGc -3'
miRNA:   3'- -CCGCGGUcaUGGCUGC-----CGGa--ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 37136 0.66 0.790568
Target:  5'- gGGCaCCAGgcGCCGGCGGUCUcuccauguucgggaUGCaGCa -3'
miRNA:   3'- -CCGcGGUCa-UGGCUGCCGGA--------------ACG-CGc -5'
24453 3' -59.7 NC_005264.1 + 38029 0.73 0.383516
Target:  5'- gGGCGCCucgguGGUGCaCGACGGUC--GCGUGg -3'
miRNA:   3'- -CCGCGG-----UCAUG-GCUGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 41427 0.72 0.468829
Target:  5'- cGGCGCCGGgcuccugcgGgCGACGGCCacucgGUGCc -3'
miRNA:   3'- -CCGCGGUCa--------UgGCUGCCGGaa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 42656 0.76 0.276307
Target:  5'- cGCGCCGGcagACUGGCGGCCggaucgucccgUGCGCc -3'
miRNA:   3'- cCGCGGUCa--UGGCUGCCGGa----------ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 44272 0.67 0.708999
Target:  5'- cGCGCCAGUGCguuUGcACGccaacauGCaCUUGCGCGu -3'
miRNA:   3'- cCGCGGUCAUG---GC-UGC-------CG-GAACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 45781 0.66 0.766379
Target:  5'- gGGCGCCGG-AgCGGCuauugcggucugGGCCgccGCGCu -3'
miRNA:   3'- -CCGCGGUCaUgGCUG------------CCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 47765 0.66 0.793199
Target:  5'- -uCGCUggauagGGUGCCGAUGGCCU-GCaCGa -3'
miRNA:   3'- ccGCGG------UCAUGGCUGCCGGAaCGcGC- -5'
24453 3' -59.7 NC_005264.1 + 48348 0.7 0.572584
Target:  5'- uGGCGCac--GCCauGGCGGCCUcguUGCGCa -3'
miRNA:   3'- -CCGCGgucaUGG--CUGCCGGA---ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 48395 0.67 0.709963
Target:  5'- gGGCGUCGGg--CGGCGGCCagGaGCGg -3'
miRNA:   3'- -CCGCGGUCaugGCUGCCGGaaCgCGC- -5'
24453 3' -59.7 NC_005264.1 + 49480 0.67 0.73856
Target:  5'- cGCGCC-GUAuUCGACGGgCagcaggUGCGCGu -3'
miRNA:   3'- cCGCGGuCAU-GGCUGCCgGa-----ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 49618 0.67 0.73856
Target:  5'- gGGCGCUcgguggGGUACCaGGgGGCCaagGUGCu -3'
miRNA:   3'- -CCGCGG------UCAUGG-CUgCCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 51097 0.74 0.352395
Target:  5'- cGGuCGCCGGUGCUG-CGGUCUgcucGCGCc -3'
miRNA:   3'- -CC-GCGGUCAUGGCuGCCGGAa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 52180 0.74 0.367729
Target:  5'- cGGCGCUccugauaaauGUGCUGAgGGCCgugggGCGCGg -3'
miRNA:   3'- -CCGCGGu---------CAUGGCUgCCGGaa---CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 54532 0.67 0.757206
Target:  5'- gGGCauGCCAGUaguguucgccGCCGAcuCGGUCa-GCGCGa -3'
miRNA:   3'- -CCG--CGGUCA----------UGGCU--GCCGGaaCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.