miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 55146 0.69 0.611844
Target:  5'- uGCGCU-GUGCUGgcgcagcguauGCGGCCUcuggGCGCGg -3'
miRNA:   3'- cCGCGGuCAUGGC-----------UGCCGGAa---CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 57866 0.77 0.229635
Target:  5'- aGCGCCAGagacggcgGCaCGGCGGCCaugGCGCGg -3'
miRNA:   3'- cCGCGGUCa-------UG-GCUGCCGGaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 59711 0.7 0.543529
Target:  5'- cGCGCCGc-GCCGGCGGCUaccGCGCc -3'
miRNA:   3'- cCGCGGUcaUGGCUGCCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 62902 0.67 0.719568
Target:  5'- uGGCaCgAGUccaccagcuuaGCCGcGCGGgCUUGCGCGg -3'
miRNA:   3'- -CCGcGgUCA-----------UGGC-UGCCgGAACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 64288 0.74 0.330254
Target:  5'- gGGUGCCgAGUAUCG-CGGCCcacaGCGCGu -3'
miRNA:   3'- -CCGCGG-UCAUGGCuGCCGGaa--CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 65584 0.68 0.690578
Target:  5'- cGUGCCAaGgcCCGGCGGCCacaucUUGCuGCu -3'
miRNA:   3'- cCGCGGU-CauGGCUGCCGG-----AACG-CGc -5'
24453 3' -59.7 NC_005264.1 + 67003 0.74 0.359239
Target:  5'- cGGCG--AGUGCugccuggacggagCGGCGGCCUUGCGCa -3'
miRNA:   3'- -CCGCggUCAUG-------------GCUGCCGGAACGCGc -5'
24453 3' -59.7 NC_005264.1 + 68315 0.7 0.582355
Target:  5'- cGGCGCCGcugcccucccacGUgGCCGACGGCUgcacuaaCGCGa -3'
miRNA:   3'- -CCGCGGU------------CA-UGGCUGCCGGaac----GCGC- -5'
24453 3' -59.7 NC_005264.1 + 68994 0.68 0.700297
Target:  5'- cGgGCCAGUgGCCcGCGGCCcUGuCGCc -3'
miRNA:   3'- cCgCGGUCA-UGGcUGCCGGaAC-GCGc -5'
24453 3' -59.7 NC_005264.1 + 71859 0.66 0.793199
Target:  5'- cGGCGgCGGUGuucCgCGACGGCaCgcggGCGCc -3'
miRNA:   3'- -CCGCgGUCAU---G-GCUGCCG-Gaa--CGCGc -5'
24453 3' -59.7 NC_005264.1 + 73710 1.11 0.001183
Target:  5'- uGGCGCCAGUACCGACGGCCUUGCGCGg -3'
miRNA:   3'- -CCGCGGUCAUGGCUGCCGGAACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 75104 0.7 0.533948
Target:  5'- aGGCGCCGGcGCCGA--GCUgggGCGCa -3'
miRNA:   3'- -CCGCGGUCaUGGCUgcCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 75205 0.68 0.661179
Target:  5'- cGCGCCccacgcgGCUGcauCGGCCcUGCGCGg -3'
miRNA:   3'- cCGCGGuca----UGGCu--GCCGGaACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 75330 0.66 0.801879
Target:  5'- cGCGCCAGUGCC---GGUaacaGCGCGu -3'
miRNA:   3'- cCGCGGUCAUGGcugCCGgaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 77975 0.68 0.697387
Target:  5'- cGGCGCCGcgcGUACCGgaGCGGgCgauaccgagcagaaUUGCGUGc -3'
miRNA:   3'- -CCGCGGU---CAUGGC--UGCCgG--------------AACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 78626 0.69 0.59216
Target:  5'- cGGCGCCucuucuGUuaaccGCCGcgGCGGCCcUGUGCc -3'
miRNA:   3'- -CCGCGGu-----CA-----UGGC--UGCCGGaACGCGc -5'
24453 3' -59.7 NC_005264.1 + 79594 0.69 0.611844
Target:  5'- cGCGCCAGcGCaucagCGGCGGCCUaGaCGCc -3'
miRNA:   3'- cCGCGGUCaUG-----GCUGCCGGAaC-GCGc -5'
24453 3' -59.7 NC_005264.1 + 79718 0.69 0.601991
Target:  5'- cGCGCCu---CCG-CGGCCUUgGCGCc -3'
miRNA:   3'- cCGCGGucauGGCuGCCGGAA-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 81616 0.67 0.746997
Target:  5'- uGCGCCAGggacgGCCGAUGcucauauGCCU--CGCGg -3'
miRNA:   3'- cCGCGGUCa----UGGCUGC-------CGGAacGCGC- -5'
24453 3' -59.7 NC_005264.1 + 81799 0.68 0.680813
Target:  5'- cGCGCCAGUGaggguaGACGGCggguagGCGCc -3'
miRNA:   3'- cCGCGGUCAUgg----CUGCCGgaa---CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.