miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 161682 0.76 0.276307
Target:  5'- cGCGCCGGcagACUGGCGGCCggaucgucccgUGCGCc -3'
miRNA:   3'- cCGCGGUCa--UGGCUGCCGGa----------ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 160454 0.72 0.468829
Target:  5'- cGGCGCCGGgcuccugcgGgCGACGGCCacucgGUGCc -3'
miRNA:   3'- -CCGCGGUCa--------UgGCUGCCGGaa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 157056 0.73 0.383516
Target:  5'- gGGCGCCucgguGGUGCaCGACGGUC--GCGUGg -3'
miRNA:   3'- -CCGCGG-----UCAUG-GCUGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 155781 0.74 0.367729
Target:  5'- cGGCGCCG--GCCGGCGccgucGCCgcuUGCGCGc -3'
miRNA:   3'- -CCGCGGUcaUGGCUGC-----CGGa--ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 154837 0.67 0.73856
Target:  5'- gGGCGCCucUGCCGgccccgcaaugGCGGCCcgUGCaCGg -3'
miRNA:   3'- -CCGCGGucAUGGC-----------UGCCGGa-ACGcGC- -5'
24453 3' -59.7 NC_005264.1 + 154101 0.66 0.784384
Target:  5'- aGGCGCUuaggaacgggGGgcgaGCCGaaacgGCGGCCacGCGCGc -3'
miRNA:   3'- -CCGCGG----------UCa---UGGC-----UGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 152952 0.68 0.700297
Target:  5'- -cCGCCAGgGCUGGgaaGGCCgugGCGCGc -3'
miRNA:   3'- ccGCGGUCaUGGCUg--CCGGaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 151403 0.68 0.661179
Target:  5'- uGGCGa-GGaUGCCGGCGGCCg-GCGUc -3'
miRNA:   3'- -CCGCggUC-AUGGCUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 150182 0.66 0.762723
Target:  5'- uGCuGCCGGccgGCCuuaauagccacauuGGCGGCCUcgcgguauagucuUGCGCGg -3'
miRNA:   3'- cCG-CGGUCa--UGG--------------CUGCCGGA-------------ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 150053 0.68 0.661179
Target:  5'- gGGCGaCGGUGCCGccuaGCGGUCgUGCGg- -3'
miRNA:   3'- -CCGCgGUCAUGGC----UGCCGGaACGCgc -5'
24453 3' -59.7 NC_005264.1 + 148315 0.67 0.74793
Target:  5'- cGCGCCGGUGuUCGuAUGGUCUgagguugcgUGCGCGg -3'
miRNA:   3'- cCGCGGUCAU-GGC-UGCCGGA---------ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 146416 0.67 0.729103
Target:  5'- aGgGCgGGUGCUGAUGGCUcgaUGcCGCGg -3'
miRNA:   3'- cCgCGgUCAUGGCUGCCGGa--AC-GCGC- -5'
24453 3' -59.7 NC_005264.1 + 145157 0.68 0.671011
Target:  5'- -cCGCCAGcgGCUGACGaGCCg-GCGUGa -3'
miRNA:   3'- ccGCGGUCa-UGGCUGC-CGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 143386 0.67 0.74793
Target:  5'- cGCGCauauacuGGUGCCGAUGagcGCCUcGCGCc -3'
miRNA:   3'- cCGCGg------UCAUGGCUGC---CGGAaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 140534 0.67 0.728153
Target:  5'- cGCGCCAGacuacagcuauccUACCGACGaCCcUGCugGCGa -3'
miRNA:   3'- cCGCGGUC-------------AUGGCUGCcGGaACG--CGC- -5'
24453 3' -59.7 NC_005264.1 + 138658 0.68 0.700297
Target:  5'- cGCGCCAGacuuUACCGaccGCGGCCgcaGCaGCc -3'
miRNA:   3'- cCGCGGUC----AUGGC---UGCCGGaa-CG-CGc -5'
24453 3' -59.7 NC_005264.1 + 137940 0.67 0.729103
Target:  5'- uGGUGCCGGUAUCGuugcgcgacuucGCGGCC--GCGa- -3'
miRNA:   3'- -CCGCGGUCAUGGC------------UGCCGGaaCGCgc -5'
24453 3' -59.7 NC_005264.1 + 135673 0.67 0.729103
Target:  5'- uGCGCCGccGUGaaGACGGCCU-GCaCGg -3'
miRNA:   3'- cCGCGGU--CAUggCUGCCGGAaCGcGC- -5'
24453 3' -59.7 NC_005264.1 + 134743 0.7 0.561881
Target:  5'- aGGCGCCGGUgcgcaauaacGCCugacuuugacgaaGACGGUCgcaugGCGCa -3'
miRNA:   3'- -CCGCGGUCA----------UGG-------------CUGCCGGaa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 133684 0.77 0.219057
Target:  5'- cGGCGCCAGUAUUGcaugcaagcuauGCGGCCacGCGCu -3'
miRNA:   3'- -CCGCGGUCAUGGC------------UGCCGGaaCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.