miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 132288 0.66 0.770018
Target:  5'- -cCGCCGGUagaagugaucgcgacACCGcgguCGGCCaaacUGCGCGa -3'
miRNA:   3'- ccGCGGUCA---------------UGGCu---GCCGGa---ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 131992 0.66 0.775441
Target:  5'- --gGCCGGUgGCgGugGGCCgaccgGCGCc -3'
miRNA:   3'- ccgCGGUCA-UGgCugCCGGaa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 131681 0.71 0.499992
Target:  5'- uGGCGgCAcgucggcucgcaagcGUAgCGugGGCC-UGCGCGg -3'
miRNA:   3'- -CCGCgGU---------------CAUgGCugCCGGaACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 130264 0.68 0.680813
Target:  5'- gGGCGCgGGUGCgcgacguugCGGCGGCUac-CGCGg -3'
miRNA:   3'- -CCGCGgUCAUG---------GCUGCCGGaacGCGC- -5'
24453 3' -59.7 NC_005264.1 + 129516 0.72 0.459853
Target:  5'- cGGCGCCGGaGgCGACGGaaccaCUgcggGCGUGg -3'
miRNA:   3'- -CCGCGGUCaUgGCUGCCg----GAa---CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 129008 0.68 0.678855
Target:  5'- cGGCGCgcaggggaauagcuaCAGccuUGCCGGCGaGCCgguccaaagcggcgUGCGCGg -3'
miRNA:   3'- -CCGCG---------------GUC---AUGGCUGC-CGGa-------------ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 127812 0.67 0.74793
Target:  5'- gGGCGUCG--GCCagGACGGCCa-GCGCu -3'
miRNA:   3'- -CCGCGGUcaUGG--CUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 126307 0.7 0.562852
Target:  5'- gGGCGCgCG--GCCGAUGGCUccUGCGCc -3'
miRNA:   3'- -CCGCG-GUcaUGGCUGCCGGa-ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 126294 0.7 0.553165
Target:  5'- cGGCGCCAGgacgaagaCGGCggGGCCUaGCGaCGg -3'
miRNA:   3'- -CCGCGGUCaug-----GCUG--CCGGAaCGC-GC- -5'
24453 3' -59.7 NC_005264.1 + 126127 0.8 0.156163
Target:  5'- cGGCGgCuGaGCCGAUGGCaCUUGCGCGg -3'
miRNA:   3'- -CCGCgGuCaUGGCUGCCG-GAACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 126092 0.7 0.572584
Target:  5'- cGGCGCCG--GCCGGCG-CCgucGCGCu -3'
miRNA:   3'- -CCGCGGUcaUGGCUGCcGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 125704 0.7 0.562852
Target:  5'- uGGCGCCAGcagcgagGCCGAgaCGGCCgccuCGCc -3'
miRNA:   3'- -CCGCGGUCa------UGGCU--GCCGGaac-GCGc -5'
24453 3' -59.7 NC_005264.1 + 123629 0.69 0.631584
Target:  5'- -cCGCCAGcGCCGcgGCGGCgUagGCGCGu -3'
miRNA:   3'- ccGCGGUCaUGGC--UGCCGgAa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 123431 0.67 0.760888
Target:  5'- cGGCGCugagcagcgCAGUgcccccuucGCCGACgucgucaucgucugaGGCCUcuggcUGCGCGa -3'
miRNA:   3'- -CCGCG---------GUCA---------UGGCUG---------------CCGGA-----ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 121996 0.69 0.59216
Target:  5'- uGCGCUAG-AUCGGCGGCCggccauaGCGgGa -3'
miRNA:   3'- cCGCGGUCaUGGCUGCCGGaa-----CGCgC- -5'
24453 3' -59.7 NC_005264.1 + 120903 0.66 0.801879
Target:  5'- cGCGgCGGaaaaacuacGCCGAgCGGCUUucUGCGCGg -3'
miRNA:   3'- cCGCgGUCa--------UGGCU-GCCGGA--ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 120705 0.67 0.73856
Target:  5'- cGCGCCGacaaaGCCGGCGGUCggGCGg- -3'
miRNA:   3'- cCGCGGUca---UGGCUGCCGGaaCGCgc -5'
24453 3' -59.7 NC_005264.1 + 120187 0.67 0.729103
Target:  5'- cGGcCGCCAGUcuGCCGGCGcGCgaUGgGgGu -3'
miRNA:   3'- -CC-GCGGUCA--UGGCUGC-CGgaACgCgC- -5'
24453 3' -59.7 NC_005264.1 + 116983 0.69 0.631584
Target:  5'- cGGCGCgCAG-ACUcgaagucuugggGGCGGUC-UGCGCGg -3'
miRNA:   3'- -CCGCG-GUCaUGG------------CUGCCGGaACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 115970 0.66 0.775441
Target:  5'- cGGCGCCcgacaGGgacGCUGAacgccaGGCCgUGUGCGu -3'
miRNA:   3'- -CCGCGG-----UCa--UGGCUg-----CCGGaACGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.