Results 21 - 40 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24453 | 3' | -59.7 | NC_005264.1 | + | 48348 | 0.7 | 0.572584 |
Target: 5'- uGGCGCac--GCCauGGCGGCCUcguUGCGCa -3' miRNA: 3'- -CCGCGgucaUGG--CUGCCGGA---ACGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 125704 | 0.7 | 0.562852 |
Target: 5'- uGGCGCCAGcagcgagGCCGAgaCGGCCgccuCGCc -3' miRNA: 3'- -CCGCGGUCa------UGGCU--GCCGGaac-GCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 157056 | 0.73 | 0.383516 |
Target: 5'- gGGCGCCucgguGGUGCaCGACGGUC--GCGUGg -3' miRNA: 3'- -CCGCGG-----UCAUG-GCUGCCGGaaCGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 155781 | 0.74 | 0.367729 |
Target: 5'- cGGCGCCG--GCCGGCGccgucGCCgcuUGCGCGc -3' miRNA: 3'- -CCGCGGUcaUGGCUGC-----CGGa--ACGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 52180 | 0.74 | 0.367729 |
Target: 5'- cGGCGCUccugauaaauGUGCUGAgGGCCgugggGCGCGg -3' miRNA: 3'- -CCGCGGu---------CAUGGCUgCCGGaa---CGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 67003 | 0.74 | 0.359239 |
Target: 5'- cGGCG--AGUGCugccuggacggagCGGCGGCCUUGCGCa -3' miRNA: 3'- -CCGCggUCAUG-------------GCUGCCGGAACGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 51097 | 0.74 | 0.352395 |
Target: 5'- cGGuCGCCGGUGCUG-CGGUCUgcucGCGCc -3' miRNA: 3'- -CC-GCGGUCAUGGCuGCCGGAa---CGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 24200 | 0.74 | 0.352395 |
Target: 5'- uGGCG-CGGUGCCGGUGGCCgaagccaGCGCGc -3' miRNA: 3'- -CCGCgGUCAUGGCUGCCGGaa-----CGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 93490 | 0.74 | 0.344899 |
Target: 5'- aGGCGCU---GCUGGCGGCCg-GCGCGu -3' miRNA: 3'- -CCGCGGucaUGGCUGCCGGaaCGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 64288 | 0.74 | 0.330254 |
Target: 5'- gGGUGCCgAGUAUCG-CGGCCcacaGCGCGu -3' miRNA: 3'- -CCGCGG-UCAUGGCuGCCGGaa--CGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 30844 | 0.73 | 0.399746 |
Target: 5'- uGGCGCCGGUcggcccACCGccacCGGCCUgucGuCGCGa -3' miRNA: 3'- -CCGCGGUCA------UGGCu---GCCGGAa--C-GCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 34990 | 0.72 | 0.44218 |
Target: 5'- cGCGCCGGguucuagACCGcCGGCCgc-CGCGg -3' miRNA: 3'- cCGCGGUCa------UGGCuGCCGGaacGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 134743 | 0.7 | 0.561881 |
Target: 5'- aGGCGCCGGUgcgcaauaacGCCugacuuugacgaaGACGGUCgcaugGCGCa -3' miRNA: 3'- -CCGCGGUCA----------UGG-------------CUGCCGGaa---CGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 95118 | 0.7 | 0.559941 |
Target: 5'- aGGCGCCacgucgaucaauucGGaaaUACgGACGGCCcggGCGCa -3' miRNA: 3'- -CCGCGG--------------UC---AUGgCUGCCGGaa-CGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 126294 | 0.7 | 0.553165 |
Target: 5'- cGGCGCCAGgacgaagaCGGCggGGCCUaGCGaCGg -3' miRNA: 3'- -CCGCGGUCaug-----GCUG--CCGGAaCGC-GC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 59711 | 0.7 | 0.543529 |
Target: 5'- cGCGCCGc-GCCGGCGGCUaccGCGCc -3' miRNA: 3'- cCGCGGUcaUGGCUGCCGGaa-CGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 5978 | 0.7 | 0.543529 |
Target: 5'- aGGaauGCCAGUACauuagcagcgCGGCGGUCgcugUGCGCa -3' miRNA: 3'- -CCg--CGGUCAUG----------GCUGCCGGa---ACGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 75104 | 0.7 | 0.533948 |
Target: 5'- aGGCGCCGGcGCCGA--GCUgggGCGCa -3' miRNA: 3'- -CCGCGGUCaUGGCUgcCGGaa-CGCGc -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 19425 | 0.71 | 0.505588 |
Target: 5'- aGGCGCCGGgugugGCCG-CGGg---GCGCGg -3' miRNA: 3'- -CCGCGGUCa----UGGCuGCCggaaCGCGC- -5' |
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24453 | 3' | -59.7 | NC_005264.1 | + | 160454 | 0.72 | 0.468829 |
Target: 5'- cGGCGCCGGgcuccugcgGgCGACGGCCacucgGUGCc -3' miRNA: 3'- -CCGCGGUCa--------UgGCUGCCGGaa---CGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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