miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 120903 0.66 0.801879
Target:  5'- cGCGgCGGaaaaacuacGCCGAgCGGCUUucUGCGCGg -3'
miRNA:   3'- cCGCgGUCa--------UGGCU-GCCGGA--ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 26381 0.67 0.74793
Target:  5'- cGGCGCCGucuCUGagcGCGGCCUcaGCGCc -3'
miRNA:   3'- -CCGCGGUcauGGC---UGCCGGAa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 8786 0.67 0.74793
Target:  5'- gGGCGUCG--GCCagGACGGCCa-GCGCu -3'
miRNA:   3'- -CCGCGGUcaUGG--CUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 73710 1.11 0.001183
Target:  5'- uGGCGCCAGUACCGACGGCCUUGCGCGg -3'
miRNA:   3'- -CCGCGGUCAUGGCUGCCGGAACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 100638 0.66 0.793199
Target:  5'- cGCGCCcucaaguuuGUAgaGAUGGCCcgacgggagUUGCGCGa -3'
miRNA:   3'- cCGCGGu--------CAUggCUGCCGG---------AACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 47765 0.66 0.793199
Target:  5'- -uCGCUggauagGGUGCCGAUGGCCU-GCaCGa -3'
miRNA:   3'- ccGCGG------UCAUGGCUGCCGGAaCGcGC- -5'
24453 3' -59.7 NC_005264.1 + 131992 0.66 0.775441
Target:  5'- --gGCCGGUgGCgGugGGCCgaccgGCGCc -3'
miRNA:   3'- ccgCGGUCA-UGgCugCCGGaa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 97514 0.66 0.775441
Target:  5'- -uUGCCAGgagcUGCCG-CGGCUgugGCGUGg -3'
miRNA:   3'- ccGCGGUC----AUGGCuGCCGGaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 45781 0.66 0.766379
Target:  5'- gGGCGCCGG-AgCGGCuauugcggucugGGCCgccGCGCu -3'
miRNA:   3'- -CCGCGGUCaUgGCUG------------CCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 54532 0.67 0.757206
Target:  5'- gGGCauGCCAGUaguguucgccGCCGAcuCGGUCa-GCGCGa -3'
miRNA:   3'- -CCG--CGGUCA----------UGGCU--GCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 88225 0.66 0.766379
Target:  5'- aGCGCCAGggggaaCGugGgGUCagGCGCGg -3'
miRNA:   3'- cCGCGGUCaug---GCugC-CGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 87136 0.66 0.766379
Target:  5'- gGGCGCacCAGUcuucgcGCCGAaagaCGGCgcUGCGCGc -3'
miRNA:   3'- -CCGCG--GUCA------UGGCU----GCCGgaACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 91415 0.66 0.801879
Target:  5'- aGCGCCGGggcACCGGCGGagucUGUGUc -3'
miRNA:   3'- cCGCGGUCa--UGGCUGCCgga-ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 150182 0.66 0.762723
Target:  5'- uGCuGCCGGccgGCCuuaauagccacauuGGCGGCCUcgcgguauagucuUGCGCGg -3'
miRNA:   3'- cCG-CGGUCa--UGG--------------CUGCCGGA-------------ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 75330 0.66 0.801879
Target:  5'- cGCGCCAGUGCC---GGUaacaGCGCGu -3'
miRNA:   3'- cCGCGGUCAUGGcugCCGgaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 132288 0.66 0.770018
Target:  5'- -cCGCCGGUagaagugaucgcgacACCGcgguCGGCCaaacUGCGCGa -3'
miRNA:   3'- ccGCGGUCA---------------UGGCu---GCCGGa---ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 4404 0.67 0.760888
Target:  5'- cGGCGCugagcagcgCAGUgcccccuucGCCGACgucgucaucgucugaGGCCUcuggcUGCGCGa -3'
miRNA:   3'- -CCGCG---------GUCA---------UGGCUG---------------CCGGA-----ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 105660 0.67 0.74793
Target:  5'- cGGCGCUu-UGCCGGCGGCagaccaUGCGa- -3'
miRNA:   3'- -CCGCGGucAUGGCUGCCGga----ACGCgc -5'
24453 3' -59.7 NC_005264.1 + 101343 0.66 0.793199
Target:  5'- cGGCGCUAGccgagACCGcGgGGCgCgucgGCGCGc -3'
miRNA:   3'- -CCGCGGUCa----UGGC-UgCCG-Gaa--CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 154101 0.66 0.784384
Target:  5'- aGGCGCUuaggaacgggGGgcgaGCCGaaacgGCGGCCacGCGCGc -3'
miRNA:   3'- -CCGCGG----------UCa---UGGC-----UGCCGGaaCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.