miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 3' -59.7 NC_005264.1 + 135673 0.67 0.729103
Target:  5'- uGCGCCGccGUGaaGACGGCCU-GCaCGg -3'
miRNA:   3'- cCGCGGU--CAUggCUGCCGGAaCGcGC- -5'
24453 3' -59.7 NC_005264.1 + 8786 0.67 0.74793
Target:  5'- gGGCGUCG--GCCagGACGGCCa-GCGCu -3'
miRNA:   3'- -CCGCGGUcaUGG--CUGCCGGaaCGCGc -5'
24453 3' -59.7 NC_005264.1 + 87136 0.66 0.766379
Target:  5'- gGGCGCacCAGUcuucgcGCCGAaagaCGGCgcUGCGCGc -3'
miRNA:   3'- -CCGCG--GUCA------UGGCU----GCCGgaACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 101343 0.66 0.793199
Target:  5'- cGGCGCUAGccgagACCGcGgGGCgCgucgGCGCGc -3'
miRNA:   3'- -CCGCGGUCa----UGGC-UgCCG-Gaa--CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 107142 0.68 0.680813
Target:  5'- cGGUGCgCAGUGCCcuGAgGGCCU--CGCu -3'
miRNA:   3'- -CCGCG-GUCAUGG--CUgCCGGAacGCGc -5'
24453 3' -59.7 NC_005264.1 + 103127 0.68 0.700297
Target:  5'- cGGCG-CGGUaGCCGcCGGCgCggcGCGCGg -3'
miRNA:   3'- -CCGCgGUCA-UGGCuGCCG-Gaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 26381 0.67 0.74793
Target:  5'- cGGCGCCGucuCUGagcGCGGCCUcaGCGCc -3'
miRNA:   3'- -CCGCGGUcauGGC---UGCCGGAa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 75330 0.66 0.801879
Target:  5'- cGCGCCAGUGCC---GGUaacaGCGCGu -3'
miRNA:   3'- cCGCGGUCAUGGcugCCGgaa-CGCGC- -5'
24453 3' -59.7 NC_005264.1 + 48395 0.67 0.709963
Target:  5'- gGGCGUCGGg--CGGCGGCCagGaGCGg -3'
miRNA:   3'- -CCGCGGUCaugGCUGCCGGaaCgCGC- -5'
24453 3' -59.7 NC_005264.1 + 91415 0.66 0.801879
Target:  5'- aGCGCCGGggcACCGGCGGagucUGUGUc -3'
miRNA:   3'- cCGCGGUCa--UGGCUGCCgga-ACGCGc -5'
24453 3' -59.7 NC_005264.1 + 105660 0.67 0.74793
Target:  5'- cGGCGCUu-UGCCGGCGGCagaccaUGCGa- -3'
miRNA:   3'- -CCGCGGucAUGGCUGCCGga----ACGCgc -5'
24453 3' -59.7 NC_005264.1 + 108467 0.67 0.729103
Target:  5'- cGCGCgGGgauCCGGUGGCC--GCGCGa -3'
miRNA:   3'- cCGCGgUCau-GGCUGCCGGaaCGCGC- -5'
24453 3' -59.7 NC_005264.1 + 150182 0.66 0.762723
Target:  5'- uGCuGCCGGccgGCCuuaauagccacauuGGCGGCCUcgcgguauagucuUGCGCGg -3'
miRNA:   3'- cCG-CGGUCa--UGG--------------CUGCCGGA-------------ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 45781 0.66 0.766379
Target:  5'- gGGCGCCGG-AgCGGCuauugcggucugGGCCgccGCGCu -3'
miRNA:   3'- -CCGCGGUCaUgGCUG------------CCGGaa-CGCGc -5'
24453 3' -59.7 NC_005264.1 + 131992 0.66 0.775441
Target:  5'- --gGCCGGUgGCgGugGGCCgaccgGCGCc -3'
miRNA:   3'- ccgCGGUCA-UGgCugCCGGaa---CGCGc -5'
24453 3' -59.7 NC_005264.1 + 100638 0.66 0.793199
Target:  5'- cGCGCCcucaaguuuGUAgaGAUGGCCcgacgggagUUGCGCGa -3'
miRNA:   3'- cCGCGGu--------CAUggCUGCCGG---------AACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 31026 0.68 0.661179
Target:  5'- gGGCGaCGGUGCCGccuaGCGGUCgUGCGg- -3'
miRNA:   3'- -CCGCgGUCAUGGC----UGCCGGaACGCgc -5'
24453 3' -59.7 NC_005264.1 + 129008 0.68 0.678855
Target:  5'- cGGCGCgcaggggaauagcuaCAGccuUGCCGGCGaGCCgguccaaagcggcgUGCGCGg -3'
miRNA:   3'- -CCGCG---------------GUC---AUGGCUGC-CGGa-------------ACGCGC- -5'
24453 3' -59.7 NC_005264.1 + 98664 0.68 0.680813
Target:  5'- uGCucgacCCAGUGCUGGCGGCgCUUGCa-- -3'
miRNA:   3'- cCGc----GGUCAUGGCUGCCG-GAACGcgc -5'
24453 3' -59.7 NC_005264.1 + 138658 0.68 0.700297
Target:  5'- cGCGCCAGacuuUACCGaccGCGGCCgcaGCaGCc -3'
miRNA:   3'- cCGCGGUC----AUGGC---UGCCGGaa-CG-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.