miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 74647 0.65 0.995568
Target:  5'- aGCGCGAacccaggGUGcAGGCCgcucuugaGCUGGUg -3'
miRNA:   3'- cUGCGCU-------UAU-UCCGGaauag---CGACCG- -5'
24453 5' -50.8 NC_005264.1 + 89088 0.66 0.995061
Target:  5'- uGCGCcagcGAUAAGGCCUUAUuCGCg--- -3'
miRNA:   3'- cUGCGc---UUAUUCCGGAAUA-GCGaccg -5'
24453 5' -50.8 NC_005264.1 + 64283 0.66 0.995061
Target:  5'- uACGCGggU---GCCgagUAUCGC-GGCc -3'
miRNA:   3'- cUGCGCuuAuucCGGa--AUAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 79715 0.66 0.995061
Target:  5'- aGACGCGccuccgcGGCCUUggCGCccgucGGCg -3'
miRNA:   3'- -CUGCGCuuauu--CCGGAAuaGCGa----CCG- -5'
24453 5' -50.8 NC_005264.1 + 52882 0.66 0.995061
Target:  5'- cGCGCGAGcgAGGGgCUg--CGUggUGGCa -3'
miRNA:   3'- cUGCGCUUa-UUCCgGAauaGCG--ACCG- -5'
24453 5' -50.8 NC_005264.1 + 121466 0.66 0.995061
Target:  5'- uACGCGuacauuagaGAGGCCguuuUCGCggcGGCa -3'
miRNA:   3'- cUGCGCuua------UUCCGGaau-AGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 883 0.66 0.995061
Target:  5'- gGACGUacgacuGggUGuacGGCCccgUGUCGCgGGCc -3'
miRNA:   3'- -CUGCG------CuuAUu--CCGGa--AUAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 119909 0.66 0.995061
Target:  5'- gGACGUacgacuGggUGuacGGCCccgUGUCGCgGGCc -3'
miRNA:   3'- -CUGCG------CuuAUu--CCGGa--AUAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 54910 0.66 0.994255
Target:  5'- cACGCGA---AGGUCgcggcgcUGCUGGCg -3'
miRNA:   3'- cUGCGCUuauUCCGGaaua---GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 42365 0.66 0.994255
Target:  5'- --gGCGAu---GGCCgg--UGCUGGCu -3'
miRNA:   3'- cugCGCUuauuCCGGaauaGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 3413 0.66 0.994255
Target:  5'- uGCGCGGgggagggacGUAGGGCCgcgcccgCGCUGcucGCa -3'
miRNA:   3'- cUGCGCU---------UAUUCCGGaaua---GCGAC---CG- -5'
24453 5' -50.8 NC_005264.1 + 94721 0.66 0.994255
Target:  5'- -cCGcCGAGUAugagcGcGCCUUGUCGCUGuacGCg -3'
miRNA:   3'- cuGC-GCUUAUu----C-CGGAAUAGCGAC---CG- -5'
24453 5' -50.8 NC_005264.1 + 35898 0.66 0.994255
Target:  5'- gGGCGUGGu----GUCgggGUCGCUGGCu -3'
miRNA:   3'- -CUGCGCUuauucCGGaa-UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 161392 0.66 0.994255
Target:  5'- --gGCGAu---GGCCgg--UGCUGGCu -3'
miRNA:   3'- cugCGCUuauuCCGGaauaGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 122440 0.66 0.994255
Target:  5'- uGCGCGGgggagggacGUAGGGCCgcgcccgCGCUGcucGCa -3'
miRNA:   3'- cUGCGCU---------UAUUCCGGaaua---GCGAC---CG- -5'
24453 5' -50.8 NC_005264.1 + 72734 0.66 0.993348
Target:  5'- cACGCGGuacacuucGgcGGGCCUgucCGCUGGg -3'
miRNA:   3'- cUGCGCU--------UauUCCGGAauaGCGACCg -5'
24453 5' -50.8 NC_005264.1 + 76302 0.66 0.993348
Target:  5'- gGGCGCGGG-GGGGCU-----GCUGGCu -3'
miRNA:   3'- -CUGCGCUUaUUCCGGaauagCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 10160 0.66 0.993348
Target:  5'- -cCGCGuccAGGGCCUcggcgaguaucuUGUCGUcGGCa -3'
miRNA:   3'- cuGCGCuuaUUCCGGA------------AUAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 70195 0.66 0.992329
Target:  5'- cGGCGCGA---GGGCCa---CGC-GGCa -3'
miRNA:   3'- -CUGCGCUuauUCCGGaauaGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 114977 0.66 0.992329
Target:  5'- aGCGCGAAcuUGAGGCgCg---UGCcGGCg -3'
miRNA:   3'- cUGCGCUU--AUUCCG-GaauaGCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.