Results 21 - 40 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24453 | 5' | -50.8 | NC_005264.1 | + | 3737 | 0.66 | 0.991189 |
Target: 5'- aGACGaCGAGgagcGGGGCCUcuUGcCGCcggGGCg -3' miRNA: 3'- -CUGC-GCUUa---UUCCGGA--AUaGCGa--CCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 22135 | 0.66 | 0.990822 |
Target: 5'- aGACGUcucuuGAGUGAGGUCUUcgguagugcuuaagGUUGC-GGCg -3' miRNA: 3'- -CUGCG-----CUUAUUCCGGAA--------------UAGCGaCCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 70103 | 0.66 | 0.991189 |
Target: 5'- cGGCGCGG---AGGaCCUUAUCgaGCUGccGCg -3' miRNA: 3'- -CUGCGCUuauUCC-GGAAUAG--CGAC--CG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 95576 | 0.66 | 0.992329 |
Target: 5'- aGCGCGAcucaAUAAGGCUcucUCG-UGGCu -3' miRNA: 3'- cUGCGCU----UAUUCCGGaauAGCgACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 114977 | 0.66 | 0.992329 |
Target: 5'- aGCGCGAAcuUGAGGCgCg---UGCcGGCg -3' miRNA: 3'- cUGCGCUU--AUUCCG-GaauaGCGaCCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 70195 | 0.66 | 0.992329 |
Target: 5'- cGGCGCGA---GGGCCa---CGC-GGCa -3' miRNA: 3'- -CUGCGCUuauUCCGGaauaGCGaCCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 72734 | 0.66 | 0.993348 |
Target: 5'- cACGCGGuacacuucGgcGGGCCUgucCGCUGGg -3' miRNA: 3'- cUGCGCU--------UauUCCGGAauaGCGACCg -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 76302 | 0.66 | 0.993348 |
Target: 5'- gGGCGCGGG-GGGGCU-----GCUGGCu -3' miRNA: 3'- -CUGCGCUUaUUCCGGaauagCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 91558 | 0.66 | 0.991189 |
Target: 5'- gGGCGCGGcggGGGGCacgaggCUUGUCGCgGaGCu -3' miRNA: 3'- -CUGCGCUua-UUCCG------GAAUAGCGaC-CG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 136793 | 0.67 | 0.990053 |
Target: 5'- cGGCGCGu----GGCCgggcggacaaaGCUGGCg -3' miRNA: 3'- -CUGCGCuuauuCCGGaauag------CGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 118071 | 0.67 | 0.988513 |
Target: 5'- aGGCGCGuuucUAAGGCCUacgCGgaGaGCa -3' miRNA: 3'- -CUGCGCuu--AUUCCGGAauaGCgaC-CG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 19475 | 0.67 | 0.988513 |
Target: 5'- cGCGCGggUAgcuuauagGGGC---AUCGgUGGCg -3' miRNA: 3'- cUGCGCuuAU--------UCCGgaaUAGCgACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 18959 | 0.67 | 0.988513 |
Target: 5'- --gGCGAAauGGGCCgcggaaacgAUCGCccgGGCa -3' miRNA: 3'- cugCGCUUauUCCGGaa-------UAGCGa--CCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 122622 | 0.67 | 0.985423 |
Target: 5'- aGGCGCGAAgaauuaccgccgcggGGGGCCgcgAggGCgGGCg -3' miRNA: 3'- -CUGCGCUUa--------------UUCCGGaa-UagCGaCCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 147557 | 0.67 | 0.984137 |
Target: 5'- cGGCGCGAAgu-GGCCgccgacgUgugcgacggggaacgGUCGCaGGCg -3' miRNA: 3'- -CUGCGCUUauuCCGGa------A---------------UAGCGaCCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 4270 | 0.67 | 0.98992 |
Target: 5'- --aGCGAGUcuguucGGCCUgcAUgGCUGGCc -3' miRNA: 3'- cugCGCUUAuu----CCGGAa-UAgCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 6313 | 0.67 | 0.983365 |
Target: 5'- uGCGCGGc-GAGGCU---UCGCgUGGCg -3' miRNA: 3'- cUGCGCUuaUUCCGGaauAGCG-ACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 3595 | 0.67 | 0.985423 |
Target: 5'- aGGCGCGAAgaauuaccgccgcggGGGGCCgcgAggGCgGGCg -3' miRNA: 3'- -CUGCGCUUa--------------UUCCGGaa-UagCGaCCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 135090 | 0.67 | 0.988513 |
Target: 5'- aGACGgGAu--AGGCCUguuacUGCUGGg -3' miRNA: 3'- -CUGCgCUuauUCCGGAaua--GCGACCg -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 128637 | 0.68 | 0.976638 |
Target: 5'- cGACGCGAAcUGcgcugagcAGGCCagaucugGUCGUUGGg -3' miRNA: 3'- -CUGCGCUU-AU--------UCCGGaa-----UAGCGACCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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