Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24453 | 5' | -50.8 | NC_005264.1 | + | 73747 | 1.13 | 0.004784 |
Target: 5'- aGACGCGAAUAAGGCCUUAUCGCUGGCg -3' miRNA: 3'- -CUGCGCUUAUUCCGGAAUAGCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 77984 | 0.82 | 0.384016 |
Target: 5'- uGGCGCGAGauacgAAGGCCgcgAUCGCgGGCg -3' miRNA: 3'- -CUGCGCUUa----UUCCGGaa-UAGCGaCCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 147798 | 0.77 | 0.630867 |
Target: 5'- uGCGCGAcgGaggugagguAGGCCUUGUCGuCUGGg -3' miRNA: 3'- cUGCGCUuaU---------UCCGGAAUAGC-GACCg -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 4891 | 0.76 | 0.694228 |
Target: 5'- cACGCGGAguucGAGGCCa---CGCUGGCc -3' miRNA: 3'- cUGCGCUUa---UUCCGGaauaGCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 25542 | 0.75 | 0.745577 |
Target: 5'- cGGCGCGGAcAAGGCgCUUGUCGCg--- -3' miRNA: 3'- -CUGCGCUUaUUCCG-GAAUAGCGaccg -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 26229 | 0.74 | 0.775187 |
Target: 5'- uGACGCGAAc-GGGUCau-UCGCUGGUu -3' miRNA: 3'- -CUGCGCUUauUCCGGaauAGCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 37647 | 0.74 | 0.794256 |
Target: 5'- cGugGCGGAgaugAAGGCUUcgGUUGCcGGCa -3' miRNA: 3'- -CugCGCUUa---UUCCGGAa-UAGCGaCCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 81946 | 0.74 | 0.812697 |
Target: 5'- gGGCGCuuGAUGAGGUCgUGUCGCUcaGGCu -3' miRNA: 3'- -CUGCGc-UUAUUCCGGaAUAGCGA--CCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 127870 | 0.73 | 0.839014 |
Target: 5'- cGCGCGAAUGGGGUCUccGUCGCc-GCu -3' miRNA: 3'- cUGCGCUUAUUCCGGAa-UAGCGacCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 137399 | 0.72 | 0.884567 |
Target: 5'- uACGCGGuccuaggcacgAAGGCCaaucgUAUCGcCUGGCg -3' miRNA: 3'- cUGCGCUua---------UUCCGGa----AUAGC-GACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 15389 | 0.72 | 0.886 |
Target: 5'- aGugGCGAuagcuUGAGGUUggGUCGCggccGGCg -3' miRNA: 3'- -CugCGCUu----AUUCCGGaaUAGCGa---CCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 76223 | 0.72 | 0.878739 |
Target: 5'- gGugGCGAAgaAAGGCU--GUCGCgaGGCg -3' miRNA: 3'- -CugCGCUUa-UUCCGGaaUAGCGa-CCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 92595 | 0.72 | 0.871242 |
Target: 5'- cGACGCGGGc-AGGUUUgaugCGCUGGCc -3' miRNA: 3'- -CUGCGCUUauUCCGGAaua-GCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 123795 | 0.71 | 0.905034 |
Target: 5'- cGCGCGAAcucGGCCaguccgacuggGUCGUUGGCg -3' miRNA: 3'- cUGCGCUUauuCCGGaa---------UAGCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 4769 | 0.71 | 0.905034 |
Target: 5'- cGCGCGAAcucGGCCaguccgacuggGUCGUUGGCg -3' miRNA: 3'- cUGCGCUUauuCCGGaa---------UAGCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 110166 | 0.71 | 0.906319 |
Target: 5'- -cCGCGGcuuUGGGGCC-UAUC-CUGGCa -3' miRNA: 3'- cuGCGCUu--AUUCCGGaAUAGcGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 90651 | 0.7 | 0.940112 |
Target: 5'- gGGCGCGcg-GAGaCCgcAUUGCUGGCg -3' miRNA: 3'- -CUGCGCuuaUUCcGGaaUAGCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 15471 | 0.7 | 0.944849 |
Target: 5'- cGACGCGAAagcGGCg--AUCGCggcgGGCa -3' miRNA: 3'- -CUGCGCUUauuCCGgaaUAGCGa---CCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 40660 | 0.7 | 0.940112 |
Target: 5'- uGCGCGA-----GCCUUAcuaCGCUGGCg -3' miRNA: 3'- cUGCGCUuauucCGGAAUa--GCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 35474 | 0.7 | 0.949333 |
Target: 5'- uGACGCGA--GAGuGCCgcggccgAUCGCgacGGCu -3' miRNA: 3'- -CUGCGCUuaUUC-CGGaa-----UAGCGa--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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