miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 73747 1.13 0.004784
Target:  5'- aGACGCGAAUAAGGCCUUAUCGCUGGCg -3'
miRNA:   3'- -CUGCGCUUAUUCCGGAAUAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 77984 0.82 0.384016
Target:  5'- uGGCGCGAGauacgAAGGCCgcgAUCGCgGGCg -3'
miRNA:   3'- -CUGCGCUUa----UUCCGGaa-UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 147798 0.77 0.630867
Target:  5'- uGCGCGAcgGaggugagguAGGCCUUGUCGuCUGGg -3'
miRNA:   3'- cUGCGCUuaU---------UCCGGAAUAGC-GACCg -5'
24453 5' -50.8 NC_005264.1 + 4891 0.76 0.694228
Target:  5'- cACGCGGAguucGAGGCCa---CGCUGGCc -3'
miRNA:   3'- cUGCGCUUa---UUCCGGaauaGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 25542 0.75 0.745577
Target:  5'- cGGCGCGGAcAAGGCgCUUGUCGCg--- -3'
miRNA:   3'- -CUGCGCUUaUUCCG-GAAUAGCGaccg -5'
24453 5' -50.8 NC_005264.1 + 26229 0.74 0.775187
Target:  5'- uGACGCGAAc-GGGUCau-UCGCUGGUu -3'
miRNA:   3'- -CUGCGCUUauUCCGGaauAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 37647 0.74 0.794256
Target:  5'- cGugGCGGAgaugAAGGCUUcgGUUGCcGGCa -3'
miRNA:   3'- -CugCGCUUa---UUCCGGAa-UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 81946 0.74 0.812697
Target:  5'- gGGCGCuuGAUGAGGUCgUGUCGCUcaGGCu -3'
miRNA:   3'- -CUGCGc-UUAUUCCGGaAUAGCGA--CCG- -5'
24453 5' -50.8 NC_005264.1 + 127870 0.73 0.839014
Target:  5'- cGCGCGAAUGGGGUCUccGUCGCc-GCu -3'
miRNA:   3'- cUGCGCUUAUUCCGGAa-UAGCGacCG- -5'
24453 5' -50.8 NC_005264.1 + 92595 0.72 0.871242
Target:  5'- cGACGCGGGc-AGGUUUgaugCGCUGGCc -3'
miRNA:   3'- -CUGCGCUUauUCCGGAaua-GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 76223 0.72 0.878739
Target:  5'- gGugGCGAAgaAAGGCU--GUCGCgaGGCg -3'
miRNA:   3'- -CugCGCUUa-UUCCGGaaUAGCGa-CCG- -5'
24453 5' -50.8 NC_005264.1 + 137399 0.72 0.884567
Target:  5'- uACGCGGuccuaggcacgAAGGCCaaucgUAUCGcCUGGCg -3'
miRNA:   3'- cUGCGCUua---------UUCCGGa----AUAGC-GACCG- -5'
24453 5' -50.8 NC_005264.1 + 15389 0.72 0.886
Target:  5'- aGugGCGAuagcuUGAGGUUggGUCGCggccGGCg -3'
miRNA:   3'- -CugCGCUu----AUUCCGGaaUAGCGa---CCG- -5'
24453 5' -50.8 NC_005264.1 + 4769 0.71 0.905034
Target:  5'- cGCGCGAAcucGGCCaguccgacuggGUCGUUGGCg -3'
miRNA:   3'- cUGCGCUUauuCCGGaa---------UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 123795 0.71 0.905034
Target:  5'- cGCGCGAAcucGGCCaguccgacuggGUCGUUGGCg -3'
miRNA:   3'- cUGCGCUUauuCCGGaa---------UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 110166 0.71 0.906319
Target:  5'- -cCGCGGcuuUGGGGCC-UAUC-CUGGCa -3'
miRNA:   3'- cuGCGCUu--AUUCCGGaAUAGcGACCG- -5'
24453 5' -50.8 NC_005264.1 + 90651 0.7 0.940112
Target:  5'- gGGCGCGcg-GAGaCCgcAUUGCUGGCg -3'
miRNA:   3'- -CUGCGCuuaUUCcGGaaUAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 40660 0.7 0.940112
Target:  5'- uGCGCGA-----GCCUUAcuaCGCUGGCg -3'
miRNA:   3'- cUGCGCUuauucCGGAAUa--GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 15471 0.7 0.944849
Target:  5'- cGACGCGAAagcGGCg--AUCGCggcgGGCa -3'
miRNA:   3'- -CUGCGCUUauuCCGgaaUAGCGa---CCG- -5'
24453 5' -50.8 NC_005264.1 + 131706 0.7 0.949333
Target:  5'- --aGCGu---GGGCCUgcgcggcGUUGCUGGCg -3'
miRNA:   3'- cugCGCuuauUCCGGAa------UAGCGACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.