miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 131706 0.7 0.949333
Target:  5'- --aGCGu---GGGCCUgcgcggcGUUGCUGGCg -3'
miRNA:   3'- cugCGCuuauUCCGGAa------UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 83201 0.69 0.953568
Target:  5'- cGGCGCGAAcUAugcgcuuuuauGGGCCguugCGCgugGGCg -3'
miRNA:   3'- -CUGCGCUU-AU-----------UCCGGaauaGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 100010 0.69 0.953568
Target:  5'- cGACGCGGAaauaaagAAGGCCgcggcggCGCUGcuGCg -3'
miRNA:   3'- -CUGCGCUUa------UUCCGGaaua---GCGAC--CG- -5'
24453 5' -50.8 NC_005264.1 + 134763 0.69 0.961306
Target:  5'- uGACGCGAGUAAGcCCguguUCGCUuccGCg -3'
miRNA:   3'- -CUGCGCUUAUUCcGGaau-AGCGAc--CG- -5'
24453 5' -50.8 NC_005264.1 + 3694 0.69 0.964819
Target:  5'- uGGCGCGGAaAGGGCgcacaguaCUUGcCGCgGGCg -3'
miRNA:   3'- -CUGCGCUUaUUCCG--------GAAUaGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 3172 0.69 0.968102
Target:  5'- aACGCGuccuuGGCCUUGUCaaagaacCUGGCc -3'
miRNA:   3'- cUGCGCuuauuCCGGAAUAGc------GACCG- -5'
24453 5' -50.8 NC_005264.1 + 122216 0.68 0.971162
Target:  5'- cGGCGCGGggAAGGgCUUAuuUCGCaGGa -3'
miRNA:   3'- -CUGCGCUuaUUCCgGAAU--AGCGaCCg -5'
24453 5' -50.8 NC_005264.1 + 3189 0.68 0.971162
Target:  5'- cGGCGCGGggAAGGgCUUAuuUCGCaGGa -3'
miRNA:   3'- -CUGCGCUuaUUCCgGAAU--AGCGaCCg -5'
24453 5' -50.8 NC_005264.1 + 145790 0.68 0.971162
Target:  5'- uGCGCGAAUAAGGaCCgcagagUAcUCacuCUGGCa -3'
miRNA:   3'- cUGCGCUUAUUCC-GGa-----AU-AGc--GACCG- -5'
24453 5' -50.8 NC_005264.1 + 80345 0.68 0.974005
Target:  5'- cGCGCGggUcGGGUCg-GUUGgaGGCg -3'
miRNA:   3'- cUGCGCuuAuUCCGGaaUAGCgaCCG- -5'
24453 5' -50.8 NC_005264.1 + 9610 0.68 0.976638
Target:  5'- cGACGCGAAcUGcgcugagcAGGCCagaucugGUCGUUGGg -3'
miRNA:   3'- -CUGCGCUU-AU--------UCCGGaa-----UAGCGACCg -5'
24453 5' -50.8 NC_005264.1 + 128637 0.68 0.976638
Target:  5'- cGACGCGAAcUGcgcugagcAGGCCagaucugGUCGUUGGg -3'
miRNA:   3'- -CUGCGCUU-AU--------UCCGGaa-----UAGCGACCg -5'
24453 5' -50.8 NC_005264.1 + 88501 0.68 0.976638
Target:  5'- -uCGCGAcugAUGAGGUCgu-UUGaCUGGCa -3'
miRNA:   3'- cuGCGCU---UAUUCCGGaauAGC-GACCG- -5'
24453 5' -50.8 NC_005264.1 + 6313 0.67 0.983365
Target:  5'- uGCGCGGc-GAGGCU---UCGCgUGGCg -3'
miRNA:   3'- cUGCGCUuaUUCCGGaauAGCG-ACCG- -5'
24453 5' -50.8 NC_005264.1 + 147557 0.67 0.984137
Target:  5'- cGGCGCGAAgu-GGCCgccgacgUgugcgacggggaacgGUCGCaGGCg -3'
miRNA:   3'- -CUGCGCUUauuCCGGa------A---------------UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 122622 0.67 0.985423
Target:  5'- aGGCGCGAAgaauuaccgccgcggGGGGCCgcgAggGCgGGCg -3'
miRNA:   3'- -CUGCGCUUa--------------UUCCGGaa-UagCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 3595 0.67 0.985423
Target:  5'- aGGCGCGAAgaauuaccgccgcggGGGGCCgcgAggGCgGGCg -3'
miRNA:   3'- -CUGCGCUUa--------------UUCCGGaa-UagCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 18959 0.67 0.988513
Target:  5'- --gGCGAAauGGGCCgcggaaacgAUCGCccgGGCa -3'
miRNA:   3'- cugCGCUUauUCCGGaa-------UAGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 118071 0.67 0.988513
Target:  5'- aGGCGCGuuucUAAGGCCUacgCGgaGaGCa -3'
miRNA:   3'- -CUGCGCuu--AUUCCGGAauaGCgaC-CG- -5'
24453 5' -50.8 NC_005264.1 + 19475 0.67 0.988513
Target:  5'- cGCGCGggUAgcuuauagGGGC---AUCGgUGGCg -3'
miRNA:   3'- cUGCGCuuAU--------UCCGgaaUAGCgACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.