miRNA display CGI


Results 41 - 60 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 18959 0.67 0.988513
Target:  5'- --gGCGAAauGGGCCgcggaaacgAUCGCccgGGCa -3'
miRNA:   3'- cugCGCUUauUCCGGaa-------UAGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 4270 0.67 0.98992
Target:  5'- --aGCGAGUcuguucGGCCUgcAUgGCUGGCc -3'
miRNA:   3'- cugCGCUUAuu----CCGGAa-UAgCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 136793 0.67 0.990053
Target:  5'- cGGCGCGu----GGCCgggcggacaaaGCUGGCg -3'
miRNA:   3'- -CUGCGCuuauuCCGGaauag------CGACCG- -5'
24453 5' -50.8 NC_005264.1 + 22135 0.66 0.990822
Target:  5'- aGACGUcucuuGAGUGAGGUCUUcgguagugcuuaagGUUGC-GGCg -3'
miRNA:   3'- -CUGCG-----CUUAUUCCGGAA--------------UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 98524 0.66 0.991189
Target:  5'- uGCGCGAcAUGuuucuGGCCUcugCGgaGGCa -3'
miRNA:   3'- cUGCGCU-UAUu----CCGGAauaGCgaCCG- -5'
24453 5' -50.8 NC_005264.1 + 4331 0.66 0.991189
Target:  5'- uGCGCGA--AAGGUagCUUAUCGCgauagauagucGGCg -3'
miRNA:   3'- cUGCGCUuaUUCCG--GAAUAGCGa----------CCG- -5'
24453 5' -50.8 NC_005264.1 + 21035 0.66 0.991189
Target:  5'- cGGCGaCGAGgaccauggaccUGGccGGCCUUAgcgCGUUGGCc -3'
miRNA:   3'- -CUGC-GCUU-----------AUU--CCGGAAUa--GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 122763 0.66 0.991189
Target:  5'- aGACGaCGAGgagcGGGGCCUcuUGcCGCcggGGCg -3'
miRNA:   3'- -CUGC-GCUUa---UUCCGGA--AUaGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 70103 0.66 0.991189
Target:  5'- cGGCGCGG---AGGaCCUUAUCgaGCUGccGCg -3'
miRNA:   3'- -CUGCGCUuauUCC-GGAAUAG--CGAC--CG- -5'
24453 5' -50.8 NC_005264.1 + 91558 0.66 0.991189
Target:  5'- gGGCGCGGcggGGGGCacgaggCUUGUCGCgGaGCu -3'
miRNA:   3'- -CUGCGCUua-UUCCG------GAAUAGCGaC-CG- -5'
24453 5' -50.8 NC_005264.1 + 3737 0.66 0.991189
Target:  5'- aGACGaCGAGgagcGGGGCCUcuUGcCGCcggGGCg -3'
miRNA:   3'- -CUGC-GCUUa---UUCCGGA--AUaGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 70195 0.66 0.992329
Target:  5'- cGGCGCGA---GGGCCa---CGC-GGCa -3'
miRNA:   3'- -CUGCGCUuauUCCGGaauaGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 95576 0.66 0.992329
Target:  5'- aGCGCGAcucaAUAAGGCUcucUCG-UGGCu -3'
miRNA:   3'- cUGCGCU----UAUUCCGGaauAGCgACCG- -5'
24453 5' -50.8 NC_005264.1 + 114977 0.66 0.992329
Target:  5'- aGCGCGAAcuUGAGGCgCg---UGCcGGCg -3'
miRNA:   3'- cUGCGCUU--AUUCCG-GaauaGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 10160 0.66 0.993348
Target:  5'- -cCGCGuccAGGGCCUcggcgaguaucuUGUCGUcGGCa -3'
miRNA:   3'- cuGCGCuuaUUCCGGA------------AUAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 72734 0.66 0.993348
Target:  5'- cACGCGGuacacuucGgcGGGCCUgucCGCUGGg -3'
miRNA:   3'- cUGCGCU--------UauUCCGGAauaGCGACCg -5'
24453 5' -50.8 NC_005264.1 + 76302 0.66 0.993348
Target:  5'- gGGCGCGGG-GGGGCU-----GCUGGCu -3'
miRNA:   3'- -CUGCGCUUaUUCCGGaauagCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 35898 0.66 0.994255
Target:  5'- gGGCGUGGu----GUCgggGUCGCUGGCu -3'
miRNA:   3'- -CUGCGCUuauucCGGaa-UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 122440 0.66 0.994255
Target:  5'- uGCGCGGgggagggacGUAGGGCCgcgcccgCGCUGcucGCa -3'
miRNA:   3'- cUGCGCU---------UAUUCCGGaaua---GCGAC---CG- -5'
24453 5' -50.8 NC_005264.1 + 94721 0.66 0.994255
Target:  5'- -cCGcCGAGUAugagcGcGCCUUGUCGCUGuacGCg -3'
miRNA:   3'- cuGC-GCUUAUu----C-CGGAAUAGCGAC---CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.