miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 114977 0.66 0.992329
Target:  5'- aGCGCGAAcuUGAGGCgCg---UGCcGGCg -3'
miRNA:   3'- cUGCGCUU--AUUCCG-GaauaGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 122763 0.66 0.991189
Target:  5'- aGACGaCGAGgagcGGGGCCUcuUGcCGCcggGGCg -3'
miRNA:   3'- -CUGC-GCUUa---UUCCGGA--AUaGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 98524 0.66 0.991189
Target:  5'- uGCGCGAcAUGuuucuGGCCUcugCGgaGGCa -3'
miRNA:   3'- cUGCGCU-UAUu----CCGGAauaGCgaCCG- -5'
24453 5' -50.8 NC_005264.1 + 21035 0.66 0.991189
Target:  5'- cGGCGaCGAGgaccauggaccUGGccGGCCUUAgcgCGUUGGCc -3'
miRNA:   3'- -CUGC-GCUU-----------AUU--CCGGAAUa--GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 91558 0.66 0.991189
Target:  5'- gGGCGCGGcggGGGGCacgaggCUUGUCGCgGaGCu -3'
miRNA:   3'- -CUGCGCUua-UUCCG------GAAUAGCGaC-CG- -5'
24453 5' -50.8 NC_005264.1 + 3737 0.66 0.991189
Target:  5'- aGACGaCGAGgagcGGGGCCUcuUGcCGCcggGGCg -3'
miRNA:   3'- -CUGC-GCUUa---UUCCGGA--AUaGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 70103 0.66 0.991189
Target:  5'- cGGCGCGG---AGGaCCUUAUCgaGCUGccGCg -3'
miRNA:   3'- -CUGCGCUuauUCC-GGAAUAG--CGAC--CG- -5'
24453 5' -50.8 NC_005264.1 + 4331 0.66 0.991189
Target:  5'- uGCGCGA--AAGGUagCUUAUCGCgauagauagucGGCg -3'
miRNA:   3'- cUGCGCUuaUUCCG--GAAUAGCGa----------CCG- -5'
24453 5' -50.8 NC_005264.1 + 22135 0.66 0.990822
Target:  5'- aGACGUcucuuGAGUGAGGUCUUcgguagugcuuaagGUUGC-GGCg -3'
miRNA:   3'- -CUGCG-----CUUAUUCCGGAA--------------UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 136793 0.67 0.990053
Target:  5'- cGGCGCGu----GGCCgggcggacaaaGCUGGCg -3'
miRNA:   3'- -CUGCGCuuauuCCGGaauag------CGACCG- -5'
24453 5' -50.8 NC_005264.1 + 4270 0.67 0.98992
Target:  5'- --aGCGAGUcuguucGGCCUgcAUgGCUGGCc -3'
miRNA:   3'- cugCGCUUAuu----CCGGAa-UAgCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 118071 0.67 0.988513
Target:  5'- aGGCGCGuuucUAAGGCCUacgCGgaGaGCa -3'
miRNA:   3'- -CUGCGCuu--AUUCCGGAauaGCgaC-CG- -5'
24453 5' -50.8 NC_005264.1 + 19475 0.67 0.988513
Target:  5'- cGCGCGggUAgcuuauagGGGC---AUCGgUGGCg -3'
miRNA:   3'- cUGCGCuuAU--------UCCGgaaUAGCgACCG- -5'
24453 5' -50.8 NC_005264.1 + 135090 0.67 0.988513
Target:  5'- aGACGgGAu--AGGCCUguuacUGCUGGg -3'
miRNA:   3'- -CUGCgCUuauUCCGGAaua--GCGACCg -5'
24453 5' -50.8 NC_005264.1 + 18959 0.67 0.988513
Target:  5'- --gGCGAAauGGGCCgcggaaacgAUCGCccgGGCa -3'
miRNA:   3'- cugCGCUUauUCCGGaa-------UAGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 3595 0.67 0.985423
Target:  5'- aGGCGCGAAgaauuaccgccgcggGGGGCCgcgAggGCgGGCg -3'
miRNA:   3'- -CUGCGCUUa--------------UUCCGGaa-UagCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 122622 0.67 0.985423
Target:  5'- aGGCGCGAAgaauuaccgccgcggGGGGCCgcgAggGCgGGCg -3'
miRNA:   3'- -CUGCGCUUa--------------UUCCGGaa-UagCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 147557 0.67 0.984137
Target:  5'- cGGCGCGAAgu-GGCCgccgacgUgugcgacggggaacgGUCGCaGGCg -3'
miRNA:   3'- -CUGCGCUUauuCCGGa------A---------------UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 6313 0.67 0.983365
Target:  5'- uGCGCGGc-GAGGCU---UCGCgUGGCg -3'
miRNA:   3'- cUGCGCUuaUUCCGGaauAGCG-ACCG- -5'
24453 5' -50.8 NC_005264.1 + 128637 0.68 0.976638
Target:  5'- cGACGCGAAcUGcgcugagcAGGCCagaucugGUCGUUGGg -3'
miRNA:   3'- -CUGCGCUU-AU--------UCCGGaa-----UAGCGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.