miRNA display CGI


Results 41 - 60 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 88501 0.68 0.976638
Target:  5'- -uCGCGAcugAUGAGGUCgu-UUGaCUGGCa -3'
miRNA:   3'- cuGCGCU---UAUUCCGGaauAGC-GACCG- -5'
24453 5' -50.8 NC_005264.1 + 128637 0.68 0.976638
Target:  5'- cGACGCGAAcUGcgcugagcAGGCCagaucugGUCGUUGGg -3'
miRNA:   3'- -CUGCGCUU-AU--------UCCGGaa-----UAGCGACCg -5'
24453 5' -50.8 NC_005264.1 + 80345 0.68 0.974005
Target:  5'- cGCGCGggUcGGGUCg-GUUGgaGGCg -3'
miRNA:   3'- cUGCGCuuAuUCCGGaaUAGCgaCCG- -5'
24453 5' -50.8 NC_005264.1 + 122216 0.68 0.971162
Target:  5'- cGGCGCGGggAAGGgCUUAuuUCGCaGGa -3'
miRNA:   3'- -CUGCGCUuaUUCCgGAAU--AGCGaCCg -5'
24453 5' -50.8 NC_005264.1 + 145790 0.68 0.971162
Target:  5'- uGCGCGAAUAAGGaCCgcagagUAcUCacuCUGGCa -3'
miRNA:   3'- cUGCGCUUAUUCC-GGa-----AU-AGc--GACCG- -5'
24453 5' -50.8 NC_005264.1 + 3189 0.68 0.971162
Target:  5'- cGGCGCGGggAAGGgCUUAuuUCGCaGGa -3'
miRNA:   3'- -CUGCGCUuaUUCCgGAAU--AGCGaCCg -5'
24453 5' -50.8 NC_005264.1 + 3172 0.69 0.968102
Target:  5'- aACGCGuccuuGGCCUUGUCaaagaacCUGGCc -3'
miRNA:   3'- cUGCGCuuauuCCGGAAUAGc------GACCG- -5'
24453 5' -50.8 NC_005264.1 + 3694 0.69 0.964819
Target:  5'- uGGCGCGGAaAGGGCgcacaguaCUUGcCGCgGGCg -3'
miRNA:   3'- -CUGCGCUUaUUCCG--------GAAUaGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 134763 0.69 0.961306
Target:  5'- uGACGCGAGUAAGcCCguguUCGCUuccGCg -3'
miRNA:   3'- -CUGCGCUUAUUCcGGaau-AGCGAc--CG- -5'
24453 5' -50.8 NC_005264.1 + 100010 0.69 0.953568
Target:  5'- cGACGCGGAaauaaagAAGGCCgcggcggCGCUGcuGCg -3'
miRNA:   3'- -CUGCGCUUa------UUCCGGaaua---GCGAC--CG- -5'
24453 5' -50.8 NC_005264.1 + 83201 0.69 0.953568
Target:  5'- cGGCGCGAAcUAugcgcuuuuauGGGCCguugCGCgugGGCg -3'
miRNA:   3'- -CUGCGCUU-AU-----------UCCGGaauaGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 35474 0.7 0.949333
Target:  5'- uGACGCGA--GAGuGCCgcggccgAUCGCgacGGCu -3'
miRNA:   3'- -CUGCGCUuaUUC-CGGaa-----UAGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 131706 0.7 0.949333
Target:  5'- --aGCGu---GGGCCUgcgcggcGUUGCUGGCg -3'
miRNA:   3'- cugCGCuuauUCCGGAa------UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 15471 0.7 0.944849
Target:  5'- cGACGCGAAagcGGCg--AUCGCggcgGGCa -3'
miRNA:   3'- -CUGCGCUUauuCCGgaaUAGCGa---CCG- -5'
24453 5' -50.8 NC_005264.1 + 90651 0.7 0.940112
Target:  5'- gGGCGCGcg-GAGaCCgcAUUGCUGGCg -3'
miRNA:   3'- -CUGCGCuuaUUCcGGaaUAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 40660 0.7 0.940112
Target:  5'- uGCGCGA-----GCCUUAcuaCGCUGGCg -3'
miRNA:   3'- cUGCGCUuauucCGGAAUa--GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 110166 0.71 0.906319
Target:  5'- -cCGCGGcuuUGGGGCC-UAUC-CUGGCa -3'
miRNA:   3'- cuGCGCUu--AUUCCGGaAUAGcGACCG- -5'
24453 5' -50.8 NC_005264.1 + 123795 0.71 0.905034
Target:  5'- cGCGCGAAcucGGCCaguccgacuggGUCGUUGGCg -3'
miRNA:   3'- cUGCGCUUauuCCGGaa---------UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 4769 0.71 0.905034
Target:  5'- cGCGCGAAcucGGCCaguccgacuggGUCGUUGGCg -3'
miRNA:   3'- cUGCGCUUauuCCGGaa---------UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 15389 0.72 0.886
Target:  5'- aGugGCGAuagcuUGAGGUUggGUCGCggccGGCg -3'
miRNA:   3'- -CugCGCUu----AUUCCGGaaUAGCGa---CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.