miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 883 0.66 0.995061
Target:  5'- gGACGUacgacuGggUGuacGGCCccgUGUCGCgGGCc -3'
miRNA:   3'- -CUGCG------CuuAUu--CCGGa--AUAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 3172 0.69 0.968102
Target:  5'- aACGCGuccuuGGCCUUGUCaaagaacCUGGCc -3'
miRNA:   3'- cUGCGCuuauuCCGGAAUAGc------GACCG- -5'
24453 5' -50.8 NC_005264.1 + 3189 0.68 0.971162
Target:  5'- cGGCGCGGggAAGGgCUUAuuUCGCaGGa -3'
miRNA:   3'- -CUGCGCUuaUUCCgGAAU--AGCGaCCg -5'
24453 5' -50.8 NC_005264.1 + 3413 0.66 0.994255
Target:  5'- uGCGCGGgggagggacGUAGGGCCgcgcccgCGCUGcucGCa -3'
miRNA:   3'- cUGCGCU---------UAUUCCGGaaua---GCGAC---CG- -5'
24453 5' -50.8 NC_005264.1 + 3595 0.67 0.985423
Target:  5'- aGGCGCGAAgaauuaccgccgcggGGGGCCgcgAggGCgGGCg -3'
miRNA:   3'- -CUGCGCUUa--------------UUCCGGaa-UagCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 3694 0.69 0.964819
Target:  5'- uGGCGCGGAaAGGGCgcacaguaCUUGcCGCgGGCg -3'
miRNA:   3'- -CUGCGCUUaUUCCG--------GAAUaGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 3737 0.66 0.991189
Target:  5'- aGACGaCGAGgagcGGGGCCUcuUGcCGCcggGGCg -3'
miRNA:   3'- -CUGC-GCUUa---UUCCGGA--AUaGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 4270 0.67 0.98992
Target:  5'- --aGCGAGUcuguucGGCCUgcAUgGCUGGCc -3'
miRNA:   3'- cugCGCUUAuu----CCGGAa-UAgCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 4331 0.66 0.991189
Target:  5'- uGCGCGA--AAGGUagCUUAUCGCgauagauagucGGCg -3'
miRNA:   3'- cUGCGCUuaUUCCG--GAAUAGCGa----------CCG- -5'
24453 5' -50.8 NC_005264.1 + 4769 0.71 0.905034
Target:  5'- cGCGCGAAcucGGCCaguccgacuggGUCGUUGGCg -3'
miRNA:   3'- cUGCGCUUauuCCGGaa---------UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 4891 0.76 0.694228
Target:  5'- cACGCGGAguucGAGGCCa---CGCUGGCc -3'
miRNA:   3'- cUGCGCUUa---UUCCGGaauaGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 6313 0.67 0.983365
Target:  5'- uGCGCGGc-GAGGCU---UCGCgUGGCg -3'
miRNA:   3'- cUGCGCUuaUUCCGGaauAGCG-ACCG- -5'
24453 5' -50.8 NC_005264.1 + 9610 0.68 0.976638
Target:  5'- cGACGCGAAcUGcgcugagcAGGCCagaucugGUCGUUGGg -3'
miRNA:   3'- -CUGCGCUU-AU--------UCCGGaa-----UAGCGACCg -5'
24453 5' -50.8 NC_005264.1 + 10160 0.66 0.993348
Target:  5'- -cCGCGuccAGGGCCUcggcgaguaucuUGUCGUcGGCa -3'
miRNA:   3'- cuGCGCuuaUUCCGGA------------AUAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 15389 0.72 0.886
Target:  5'- aGugGCGAuagcuUGAGGUUggGUCGCggccGGCg -3'
miRNA:   3'- -CugCGCUu----AUUCCGGaaUAGCGa---CCG- -5'
24453 5' -50.8 NC_005264.1 + 15471 0.7 0.944849
Target:  5'- cGACGCGAAagcGGCg--AUCGCggcgGGCa -3'
miRNA:   3'- -CUGCGCUUauuCCGgaaUAGCGa---CCG- -5'
24453 5' -50.8 NC_005264.1 + 18959 0.67 0.988513
Target:  5'- --gGCGAAauGGGCCgcggaaacgAUCGCccgGGCa -3'
miRNA:   3'- cugCGCUUauUCCGGaa-------UAGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 19475 0.67 0.988513
Target:  5'- cGCGCGggUAgcuuauagGGGC---AUCGgUGGCg -3'
miRNA:   3'- cUGCGCuuAU--------UCCGgaaUAGCgACCG- -5'
24453 5' -50.8 NC_005264.1 + 21035 0.66 0.991189
Target:  5'- cGGCGaCGAGgaccauggaccUGGccGGCCUUAgcgCGUUGGCc -3'
miRNA:   3'- -CUGC-GCUU-----------AUU--CCGGAAUa--GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 22135 0.66 0.990822
Target:  5'- aGACGUcucuuGAGUGAGGUCUUcgguagugcuuaagGUUGC-GGCg -3'
miRNA:   3'- -CUGCG-----CUUAUUCCGGAA--------------UAGCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.