miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 25542 0.75 0.745577
Target:  5'- cGGCGCGGAcAAGGCgCUUGUCGCg--- -3'
miRNA:   3'- -CUGCGCUUaUUCCG-GAAUAGCGaccg -5'
24453 5' -50.8 NC_005264.1 + 26229 0.74 0.775187
Target:  5'- uGACGCGAAc-GGGUCau-UCGCUGGUu -3'
miRNA:   3'- -CUGCGCUUauUCCGGaauAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 35474 0.7 0.949333
Target:  5'- uGACGCGA--GAGuGCCgcggccgAUCGCgacGGCu -3'
miRNA:   3'- -CUGCGCUuaUUC-CGGaa-----UAGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 35898 0.66 0.994255
Target:  5'- gGGCGUGGu----GUCgggGUCGCUGGCu -3'
miRNA:   3'- -CUGCGCUuauucCGGaa-UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 37647 0.74 0.794256
Target:  5'- cGugGCGGAgaugAAGGCUUcgGUUGCcGGCa -3'
miRNA:   3'- -CugCGCUUa---UUCCGGAa-UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 40660 0.7 0.940112
Target:  5'- uGCGCGA-----GCCUUAcuaCGCUGGCg -3'
miRNA:   3'- cUGCGCUuauucCGGAAUa--GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 42365 0.66 0.994255
Target:  5'- --gGCGAu---GGCCgg--UGCUGGCu -3'
miRNA:   3'- cugCGCUuauuCCGGaauaGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 52882 0.66 0.995061
Target:  5'- cGCGCGAGcgAGGGgCUg--CGUggUGGCa -3'
miRNA:   3'- cUGCGCUUa-UUCCgGAauaGCG--ACCG- -5'
24453 5' -50.8 NC_005264.1 + 54910 0.66 0.994255
Target:  5'- cACGCGA---AGGUCgcggcgcUGCUGGCg -3'
miRNA:   3'- cUGCGCUuauUCCGGaaua---GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 64283 0.66 0.995061
Target:  5'- uACGCGggU---GCCgagUAUCGC-GGCc -3'
miRNA:   3'- cUGCGCuuAuucCGGa--AUAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 70103 0.66 0.991189
Target:  5'- cGGCGCGG---AGGaCCUUAUCgaGCUGccGCg -3'
miRNA:   3'- -CUGCGCUuauUCC-GGAAUAG--CGAC--CG- -5'
24453 5' -50.8 NC_005264.1 + 70195 0.66 0.992329
Target:  5'- cGGCGCGA---GGGCCa---CGC-GGCa -3'
miRNA:   3'- -CUGCGCUuauUCCGGaauaGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 72734 0.66 0.993348
Target:  5'- cACGCGGuacacuucGgcGGGCCUgucCGCUGGg -3'
miRNA:   3'- cUGCGCU--------UauUCCGGAauaGCGACCg -5'
24453 5' -50.8 NC_005264.1 + 73747 1.13 0.004784
Target:  5'- aGACGCGAAUAAGGCCUUAUCGCUGGCg -3'
miRNA:   3'- -CUGCGCUUAUUCCGGAAUAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 74647 0.65 0.995568
Target:  5'- aGCGCGAacccaggGUGcAGGCCgcucuugaGCUGGUg -3'
miRNA:   3'- cUGCGCU-------UAU-UCCGGaauag---CGACCG- -5'
24453 5' -50.8 NC_005264.1 + 76223 0.72 0.878739
Target:  5'- gGugGCGAAgaAAGGCU--GUCGCgaGGCg -3'
miRNA:   3'- -CugCGCUUa-UUCCGGaaUAGCGa-CCG- -5'
24453 5' -50.8 NC_005264.1 + 76302 0.66 0.993348
Target:  5'- gGGCGCGGG-GGGGCU-----GCUGGCu -3'
miRNA:   3'- -CUGCGCUUaUUCCGGaauagCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 77984 0.82 0.384016
Target:  5'- uGGCGCGAGauacgAAGGCCgcgAUCGCgGGCg -3'
miRNA:   3'- -CUGCGCUUa----UUCCGGaa-UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 79715 0.66 0.995061
Target:  5'- aGACGCGccuccgcGGCCUUggCGCccgucGGCg -3'
miRNA:   3'- -CUGCGCuuauu--CCGGAAuaGCGa----CCG- -5'
24453 5' -50.8 NC_005264.1 + 80345 0.68 0.974005
Target:  5'- cGCGCGggUcGGGUCg-GUUGgaGGCg -3'
miRNA:   3'- cUGCGCuuAuUCCGGaaUAGCgaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.