miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 161392 0.66 0.994255
Target:  5'- --gGCGAu---GGCCgg--UGCUGGCu -3'
miRNA:   3'- cugCGCUuauuCCGGaauaGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 147798 0.77 0.630867
Target:  5'- uGCGCGAcgGaggugagguAGGCCUUGUCGuCUGGg -3'
miRNA:   3'- cUGCGCUuaU---------UCCGGAAUAGC-GACCg -5'
24453 5' -50.8 NC_005264.1 + 147557 0.67 0.984137
Target:  5'- cGGCGCGAAgu-GGCCgccgacgUgugcgacggggaacgGUCGCaGGCg -3'
miRNA:   3'- -CUGCGCUUauuCCGGa------A---------------UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 145790 0.68 0.971162
Target:  5'- uGCGCGAAUAAGGaCCgcagagUAcUCacuCUGGCa -3'
miRNA:   3'- cUGCGCUUAUUCC-GGa-----AU-AGc--GACCG- -5'
24453 5' -50.8 NC_005264.1 + 137399 0.72 0.884567
Target:  5'- uACGCGGuccuaggcacgAAGGCCaaucgUAUCGcCUGGCg -3'
miRNA:   3'- cUGCGCUua---------UUCCGGa----AUAGC-GACCG- -5'
24453 5' -50.8 NC_005264.1 + 136793 0.67 0.990053
Target:  5'- cGGCGCGu----GGCCgggcggacaaaGCUGGCg -3'
miRNA:   3'- -CUGCGCuuauuCCGGaauag------CGACCG- -5'
24453 5' -50.8 NC_005264.1 + 135090 0.67 0.988513
Target:  5'- aGACGgGAu--AGGCCUguuacUGCUGGg -3'
miRNA:   3'- -CUGCgCUuauUCCGGAaua--GCGACCg -5'
24453 5' -50.8 NC_005264.1 + 134763 0.69 0.961306
Target:  5'- uGACGCGAGUAAGcCCguguUCGCUuccGCg -3'
miRNA:   3'- -CUGCGCUUAUUCcGGaau-AGCGAc--CG- -5'
24453 5' -50.8 NC_005264.1 + 131706 0.7 0.949333
Target:  5'- --aGCGu---GGGCCUgcgcggcGUUGCUGGCg -3'
miRNA:   3'- cugCGCuuauUCCGGAa------UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 128637 0.68 0.976638
Target:  5'- cGACGCGAAcUGcgcugagcAGGCCagaucugGUCGUUGGg -3'
miRNA:   3'- -CUGCGCUU-AU--------UCCGGaa-----UAGCGACCg -5'
24453 5' -50.8 NC_005264.1 + 127870 0.73 0.839014
Target:  5'- cGCGCGAAUGGGGUCUccGUCGCc-GCu -3'
miRNA:   3'- cUGCGCUUAUUCCGGAa-UAGCGacCG- -5'
24453 5' -50.8 NC_005264.1 + 123795 0.71 0.905034
Target:  5'- cGCGCGAAcucGGCCaguccgacuggGUCGUUGGCg -3'
miRNA:   3'- cUGCGCUUauuCCGGaa---------UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 122763 0.66 0.991189
Target:  5'- aGACGaCGAGgagcGGGGCCUcuUGcCGCcggGGCg -3'
miRNA:   3'- -CUGC-GCUUa---UUCCGGA--AUaGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 122622 0.67 0.985423
Target:  5'- aGGCGCGAAgaauuaccgccgcggGGGGCCgcgAggGCgGGCg -3'
miRNA:   3'- -CUGCGCUUa--------------UUCCGGaa-UagCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 122440 0.66 0.994255
Target:  5'- uGCGCGGgggagggacGUAGGGCCgcgcccgCGCUGcucGCa -3'
miRNA:   3'- cUGCGCU---------UAUUCCGGaaua---GCGAC---CG- -5'
24453 5' -50.8 NC_005264.1 + 122216 0.68 0.971162
Target:  5'- cGGCGCGGggAAGGgCUUAuuUCGCaGGa -3'
miRNA:   3'- -CUGCGCUuaUUCCgGAAU--AGCGaCCg -5'
24453 5' -50.8 NC_005264.1 + 121466 0.66 0.995061
Target:  5'- uACGCGuacauuagaGAGGCCguuuUCGCggcGGCa -3'
miRNA:   3'- cUGCGCuua------UUCCGGaau-AGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 119909 0.66 0.995061
Target:  5'- gGACGUacgacuGggUGuacGGCCccgUGUCGCgGGCc -3'
miRNA:   3'- -CUGCG------CuuAUu--CCGGa--AUAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 118071 0.67 0.988513
Target:  5'- aGGCGCGuuucUAAGGCCUacgCGgaGaGCa -3'
miRNA:   3'- -CUGCGCuu--AUUCCGGAauaGCgaC-CG- -5'
24453 5' -50.8 NC_005264.1 + 114977 0.66 0.992329
Target:  5'- aGCGCGAAcuUGAGGCgCg---UGCcGGCg -3'
miRNA:   3'- cUGCGCUU--AUUCCG-GaauaGCGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.