miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 110166 0.71 0.906319
Target:  5'- -cCGCGGcuuUGGGGCC-UAUC-CUGGCa -3'
miRNA:   3'- cuGCGCUu--AUUCCGGaAUAGcGACCG- -5'
24453 5' -50.8 NC_005264.1 + 100010 0.69 0.953568
Target:  5'- cGACGCGGAaauaaagAAGGCCgcggcggCGCUGcuGCg -3'
miRNA:   3'- -CUGCGCUUa------UUCCGGaaua---GCGAC--CG- -5'
24453 5' -50.8 NC_005264.1 + 98524 0.66 0.991189
Target:  5'- uGCGCGAcAUGuuucuGGCCUcugCGgaGGCa -3'
miRNA:   3'- cUGCGCU-UAUu----CCGGAauaGCgaCCG- -5'
24453 5' -50.8 NC_005264.1 + 95576 0.66 0.992329
Target:  5'- aGCGCGAcucaAUAAGGCUcucUCG-UGGCu -3'
miRNA:   3'- cUGCGCU----UAUUCCGGaauAGCgACCG- -5'
24453 5' -50.8 NC_005264.1 + 94721 0.66 0.994255
Target:  5'- -cCGcCGAGUAugagcGcGCCUUGUCGCUGuacGCg -3'
miRNA:   3'- cuGC-GCUUAUu----C-CGGAAUAGCGAC---CG- -5'
24453 5' -50.8 NC_005264.1 + 92595 0.72 0.871242
Target:  5'- cGACGCGGGc-AGGUUUgaugCGCUGGCc -3'
miRNA:   3'- -CUGCGCUUauUCCGGAaua-GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 91558 0.66 0.991189
Target:  5'- gGGCGCGGcggGGGGCacgaggCUUGUCGCgGaGCu -3'
miRNA:   3'- -CUGCGCUua-UUCCG------GAAUAGCGaC-CG- -5'
24453 5' -50.8 NC_005264.1 + 90651 0.7 0.940112
Target:  5'- gGGCGCGcg-GAGaCCgcAUUGCUGGCg -3'
miRNA:   3'- -CUGCGCuuaUUCcGGaaUAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 89088 0.66 0.995061
Target:  5'- uGCGCcagcGAUAAGGCCUUAUuCGCg--- -3'
miRNA:   3'- cUGCGc---UUAUUCCGGAAUA-GCGaccg -5'
24453 5' -50.8 NC_005264.1 + 88501 0.68 0.976638
Target:  5'- -uCGCGAcugAUGAGGUCgu-UUGaCUGGCa -3'
miRNA:   3'- cuGCGCU---UAUUCCGGaauAGC-GACCG- -5'
24453 5' -50.8 NC_005264.1 + 83201 0.69 0.953568
Target:  5'- cGGCGCGAAcUAugcgcuuuuauGGGCCguugCGCgugGGCg -3'
miRNA:   3'- -CUGCGCUU-AU-----------UCCGGaauaGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 81946 0.74 0.812697
Target:  5'- gGGCGCuuGAUGAGGUCgUGUCGCUcaGGCu -3'
miRNA:   3'- -CUGCGc-UUAUUCCGGaAUAGCGA--CCG- -5'
24453 5' -50.8 NC_005264.1 + 80345 0.68 0.974005
Target:  5'- cGCGCGggUcGGGUCg-GUUGgaGGCg -3'
miRNA:   3'- cUGCGCuuAuUCCGGaaUAGCgaCCG- -5'
24453 5' -50.8 NC_005264.1 + 79715 0.66 0.995061
Target:  5'- aGACGCGccuccgcGGCCUUggCGCccgucGGCg -3'
miRNA:   3'- -CUGCGCuuauu--CCGGAAuaGCGa----CCG- -5'
24453 5' -50.8 NC_005264.1 + 77984 0.82 0.384016
Target:  5'- uGGCGCGAGauacgAAGGCCgcgAUCGCgGGCg -3'
miRNA:   3'- -CUGCGCUUa----UUCCGGaa-UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 76302 0.66 0.993348
Target:  5'- gGGCGCGGG-GGGGCU-----GCUGGCu -3'
miRNA:   3'- -CUGCGCUUaUUCCGGaauagCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 76223 0.72 0.878739
Target:  5'- gGugGCGAAgaAAGGCU--GUCGCgaGGCg -3'
miRNA:   3'- -CugCGCUUa-UUCCGGaaUAGCGa-CCG- -5'
24453 5' -50.8 NC_005264.1 + 74647 0.65 0.995568
Target:  5'- aGCGCGAacccaggGUGcAGGCCgcucuugaGCUGGUg -3'
miRNA:   3'- cUGCGCU-------UAU-UCCGGaauag---CGACCG- -5'
24453 5' -50.8 NC_005264.1 + 73747 1.13 0.004784
Target:  5'- aGACGCGAAUAAGGCCUUAUCGCUGGCg -3'
miRNA:   3'- -CUGCGCUUAUUCCGGAAUAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 72734 0.66 0.993348
Target:  5'- cACGCGGuacacuucGgcGGGCCUgucCGCUGGg -3'
miRNA:   3'- cUGCGCU--------UauUCCGGAauaGCGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.