miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 136793 0.67 0.990053
Target:  5'- cGGCGCGu----GGCCgggcggacaaaGCUGGCg -3'
miRNA:   3'- -CUGCGCuuauuCCGGaauag------CGACCG- -5'
24453 5' -50.8 NC_005264.1 + 145790 0.68 0.971162
Target:  5'- uGCGCGAAUAAGGaCCgcagagUAcUCacuCUGGCa -3'
miRNA:   3'- cUGCGCUUAUUCC-GGa-----AU-AGc--GACCG- -5'
24453 5' -50.8 NC_005264.1 + 80345 0.68 0.974005
Target:  5'- cGCGCGggUcGGGUCg-GUUGgaGGCg -3'
miRNA:   3'- cUGCGCuuAuUCCGGaaUAGCgaCCG- -5'
24453 5' -50.8 NC_005264.1 + 128637 0.68 0.976638
Target:  5'- cGACGCGAAcUGcgcugagcAGGCCagaucugGUCGUUGGg -3'
miRNA:   3'- -CUGCGCUU-AU--------UCCGGaa-----UAGCGACCg -5'
24453 5' -50.8 NC_005264.1 + 6313 0.67 0.983365
Target:  5'- uGCGCGGc-GAGGCU---UCGCgUGGCg -3'
miRNA:   3'- cUGCGCUuaUUCCGGaauAGCG-ACCG- -5'
24453 5' -50.8 NC_005264.1 + 147557 0.67 0.984137
Target:  5'- cGGCGCGAAgu-GGCCgccgacgUgugcgacggggaacgGUCGCaGGCg -3'
miRNA:   3'- -CUGCGCUUauuCCGGa------A---------------UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 122622 0.67 0.985423
Target:  5'- aGGCGCGAAgaauuaccgccgcggGGGGCCgcgAggGCgGGCg -3'
miRNA:   3'- -CUGCGCUUa--------------UUCCGGaa-UagCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 18959 0.67 0.988513
Target:  5'- --gGCGAAauGGGCCgcggaaacgAUCGCccgGGCa -3'
miRNA:   3'- cugCGCUUauUCCGGaa-------UAGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 4270 0.67 0.98992
Target:  5'- --aGCGAGUcuguucGGCCUgcAUgGCUGGCc -3'
miRNA:   3'- cugCGCUUAuu----CCGGAa-UAgCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 122216 0.68 0.971162
Target:  5'- cGGCGCGGggAAGGgCUUAuuUCGCaGGa -3'
miRNA:   3'- -CUGCGCUuaUUCCgGAAU--AGCGaCCg -5'
24453 5' -50.8 NC_005264.1 + 3172 0.69 0.968102
Target:  5'- aACGCGuccuuGGCCUUGUCaaagaacCUGGCc -3'
miRNA:   3'- cUGCGCuuauuCCGGAAUAGc------GACCG- -5'
24453 5' -50.8 NC_005264.1 + 3694 0.69 0.964819
Target:  5'- uGGCGCGGAaAGGGCgcacaguaCUUGcCGCgGGCg -3'
miRNA:   3'- -CUGCGCUUaUUCCG--------GAAUaGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 37647 0.74 0.794256
Target:  5'- cGugGCGGAgaugAAGGCUUcgGUUGCcGGCa -3'
miRNA:   3'- -CugCGCUUa---UUCCGGAa-UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 81946 0.74 0.812697
Target:  5'- gGGCGCuuGAUGAGGUCgUGUCGCUcaGGCu -3'
miRNA:   3'- -CUGCGc-UUAUUCCGGaAUAGCGA--CCG- -5'
24453 5' -50.8 NC_005264.1 + 92595 0.72 0.871242
Target:  5'- cGACGCGGGc-AGGUUUgaugCGCUGGCc -3'
miRNA:   3'- -CUGCGCUUauUCCGGAaua-GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 76223 0.72 0.878739
Target:  5'- gGugGCGAAgaAAGGCU--GUCGCgaGGCg -3'
miRNA:   3'- -CugCGCUUa-UUCCGGaaUAGCGa-CCG- -5'
24453 5' -50.8 NC_005264.1 + 123795 0.71 0.905034
Target:  5'- cGCGCGAAcucGGCCaguccgacuggGUCGUUGGCg -3'
miRNA:   3'- cUGCGCUUauuCCGGaa---------UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 40660 0.7 0.940112
Target:  5'- uGCGCGA-----GCCUUAcuaCGCUGGCg -3'
miRNA:   3'- cUGCGCUuauucCGGAAUa--GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 15471 0.7 0.944849
Target:  5'- cGACGCGAAagcGGCg--AUCGCggcgGGCa -3'
miRNA:   3'- -CUGCGCUUauuCCGgaaUAGCGa---CCG- -5'
24453 5' -50.8 NC_005264.1 + 35474 0.7 0.949333
Target:  5'- uGACGCGA--GAGuGCCgcggccgAUCGCgacGGCu -3'
miRNA:   3'- -CUGCGCUuaUUC-CGGaa-----UAGCGa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.