Results 41 - 60 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24453 | 5' | -50.8 | NC_005264.1 | + | 88501 | 0.68 | 0.976638 |
Target: 5'- -uCGCGAcugAUGAGGUCgu-UUGaCUGGCa -3' miRNA: 3'- cuGCGCU---UAUUCCGGaauAGC-GACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 3189 | 0.68 | 0.971162 |
Target: 5'- cGGCGCGGggAAGGgCUUAuuUCGCaGGa -3' miRNA: 3'- -CUGCGCUuaUUCCgGAAU--AGCGaCCg -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 134763 | 0.69 | 0.961306 |
Target: 5'- uGACGCGAGUAAGcCCguguUCGCUuccGCg -3' miRNA: 3'- -CUGCGCUUAUUCcGGaau-AGCGAc--CG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 100010 | 0.69 | 0.953568 |
Target: 5'- cGACGCGGAaauaaagAAGGCCgcggcggCGCUGcuGCg -3' miRNA: 3'- -CUGCGCUUa------UUCCGGaaua---GCGAC--CG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 83201 | 0.69 | 0.953568 |
Target: 5'- cGGCGCGAAcUAugcgcuuuuauGGGCCguugCGCgugGGCg -3' miRNA: 3'- -CUGCGCUU-AU-----------UCCGGaauaGCGa--CCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 131706 | 0.7 | 0.949333 |
Target: 5'- --aGCGu---GGGCCUgcgcggcGUUGCUGGCg -3' miRNA: 3'- cugCGCuuauUCCGGAa------UAGCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 91558 | 0.66 | 0.991189 |
Target: 5'- gGGCGCGGcggGGGGCacgaggCUUGUCGCgGaGCu -3' miRNA: 3'- -CUGCGCUua-UUCCG------GAAUAGCGaC-CG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 3737 | 0.66 | 0.991189 |
Target: 5'- aGACGaCGAGgagcGGGGCCUcuUGcCGCcggGGCg -3' miRNA: 3'- -CUGC-GCUUa---UUCCGGA--AUaGCGa--CCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 70103 | 0.66 | 0.991189 |
Target: 5'- cGGCGCGG---AGGaCCUUAUCgaGCUGccGCg -3' miRNA: 3'- -CUGCGCUuauUCC-GGAAUAG--CGAC--CG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 52882 | 0.66 | 0.995061 |
Target: 5'- cGCGCGAGcgAGGGgCUg--CGUggUGGCa -3' miRNA: 3'- cUGCGCUUa-UUCCgGAauaGCG--ACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 121466 | 0.66 | 0.995061 |
Target: 5'- uACGCGuacauuagaGAGGCCguuuUCGCggcGGCa -3' miRNA: 3'- cUGCGCuua------UUCCGGaau-AGCGa--CCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 883 | 0.66 | 0.995061 |
Target: 5'- gGACGUacgacuGggUGuacGGCCccgUGUCGCgGGCc -3' miRNA: 3'- -CUGCG------CuuAUu--CCGGa--AUAGCGaCCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 54910 | 0.66 | 0.994255 |
Target: 5'- cACGCGA---AGGUCgcggcgcUGCUGGCg -3' miRNA: 3'- cUGCGCUuauUCCGGaaua---GCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 42365 | 0.66 | 0.994255 |
Target: 5'- --gGCGAu---GGCCgg--UGCUGGCu -3' miRNA: 3'- cugCGCUuauuCCGGaauaGCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 3413 | 0.66 | 0.994255 |
Target: 5'- uGCGCGGgggagggacGUAGGGCCgcgcccgCGCUGcucGCa -3' miRNA: 3'- cUGCGCU---------UAUUCCGGaaua---GCGAC---CG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 94721 | 0.66 | 0.994255 |
Target: 5'- -cCGcCGAGUAugagcGcGCCUUGUCGCUGuacGCg -3' miRNA: 3'- cuGC-GCUUAUu----C-CGGAAUAGCGAC---CG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 76302 | 0.66 | 0.993348 |
Target: 5'- gGGCGCGGG-GGGGCU-----GCUGGCu -3' miRNA: 3'- -CUGCGCUUaUUCCGGaauagCGACCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 72734 | 0.66 | 0.993348 |
Target: 5'- cACGCGGuacacuucGgcGGGCCUgucCGCUGGg -3' miRNA: 3'- cUGCGCU--------UauUCCGGAauaGCGACCg -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 70195 | 0.66 | 0.992329 |
Target: 5'- cGGCGCGA---GGGCCa---CGC-GGCa -3' miRNA: 3'- -CUGCGCUuauUCCGGaauaGCGaCCG- -5' |
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24453 | 5' | -50.8 | NC_005264.1 | + | 95576 | 0.66 | 0.992329 |
Target: 5'- aGCGCGAcucaAUAAGGCUcucUCG-UGGCu -3' miRNA: 3'- cUGCGCU----UAUUCCGGaauAGCgACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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