miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 74647 0.65 0.995568
Target:  5'- aGCGCGAacccaggGUGcAGGCCgcucuugaGCUGGUg -3'
miRNA:   3'- cUGCGCU-------UAU-UCCGGaauag---CGACCG- -5'
24453 5' -50.8 NC_005264.1 + 19475 0.67 0.988513
Target:  5'- cGCGCGggUAgcuuauagGGGC---AUCGgUGGCg -3'
miRNA:   3'- cUGCGCuuAU--------UCCGgaaUAGCgACCG- -5'
24453 5' -50.8 NC_005264.1 + 3595 0.67 0.985423
Target:  5'- aGGCGCGAAgaauuaccgccgcggGGGGCCgcgAggGCgGGCg -3'
miRNA:   3'- -CUGCGCUUa--------------UUCCGGaa-UagCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 73747 1.13 0.004784
Target:  5'- aGACGCGAAUAAGGCCUUAUCGCUGGCg -3'
miRNA:   3'- -CUGCGCUUAUUCCGGAAUAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 54910 0.66 0.994255
Target:  5'- cACGCGA---AGGUCgcggcgcUGCUGGCg -3'
miRNA:   3'- cUGCGCUuauUCCGGaaua---GCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 42365 0.66 0.994255
Target:  5'- --gGCGAu---GGCCgg--UGCUGGCu -3'
miRNA:   3'- cugCGCUuauuCCGGaauaGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 94721 0.66 0.994255
Target:  5'- -cCGcCGAGUAugagcGcGCCUUGUCGCUGuacGCg -3'
miRNA:   3'- cuGC-GCUUAUu----C-CGGAAUAGCGAC---CG- -5'
24453 5' -50.8 NC_005264.1 + 76302 0.66 0.993348
Target:  5'- gGGCGCGGG-GGGGCU-----GCUGGCu -3'
miRNA:   3'- -CUGCGCUUaUUCCGGaauagCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 95576 0.66 0.992329
Target:  5'- aGCGCGAcucaAUAAGGCUcucUCG-UGGCu -3'
miRNA:   3'- cUGCGCU----UAUUCCGGaauAGCgACCG- -5'
24453 5' -50.8 NC_005264.1 + 118071 0.67 0.988513
Target:  5'- aGGCGCGuuucUAAGGCCUacgCGgaGaGCa -3'
miRNA:   3'- -CUGCGCuu--AUUCCGGAauaGCgaC-CG- -5'
24453 5' -50.8 NC_005264.1 + 3737 0.66 0.991189
Target:  5'- aGACGaCGAGgagcGGGGCCUcuUGcCGCcggGGCg -3'
miRNA:   3'- -CUGC-GCUUa---UUCCGGA--AUaGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 70195 0.66 0.992329
Target:  5'- cGGCGCGA---GGGCCa---CGC-GGCa -3'
miRNA:   3'- -CUGCGCUuauUCCGGaauaGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 52882 0.66 0.995061
Target:  5'- cGCGCGAGcgAGGGgCUg--CGUggUGGCa -3'
miRNA:   3'- cUGCGCUUa-UUCCgGAauaGCG--ACCG- -5'
24453 5' -50.8 NC_005264.1 + 91558 0.66 0.991189
Target:  5'- gGGCGCGGcggGGGGCacgaggCUUGUCGCgGaGCu -3'
miRNA:   3'- -CUGCGCUua-UUCCG------GAAUAGCGaC-CG- -5'
24453 5' -50.8 NC_005264.1 + 121466 0.66 0.995061
Target:  5'- uACGCGuacauuagaGAGGCCguuuUCGCggcGGCa -3'
miRNA:   3'- cUGCGCuua------UUCCGGaau-AGCGa--CCG- -5'
24453 5' -50.8 NC_005264.1 + 72734 0.66 0.993348
Target:  5'- cACGCGGuacacuucGgcGGGCCUgucCGCUGGg -3'
miRNA:   3'- cUGCGCU--------UauUCCGGAauaGCGACCg -5'
24453 5' -50.8 NC_005264.1 + 22135 0.66 0.990822
Target:  5'- aGACGUcucuuGAGUGAGGUCUUcgguagugcuuaagGUUGC-GGCg -3'
miRNA:   3'- -CUGCG-----CUUAUUCCGGAA--------------UAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 135090 0.67 0.988513
Target:  5'- aGACGgGAu--AGGCCUguuacUGCUGGg -3'
miRNA:   3'- -CUGCgCUuauUCCGGAaua--GCGACCg -5'
24453 5' -50.8 NC_005264.1 + 883 0.66 0.995061
Target:  5'- gGACGUacgacuGggUGuacGGCCccgUGUCGCgGGCc -3'
miRNA:   3'- -CUGCG------CuuAUu--CCGGa--AUAGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 3413 0.66 0.994255
Target:  5'- uGCGCGGgggagggacGUAGGGCCgcgcccgCGCUGcucGCa -3'
miRNA:   3'- cUGCGCU---------UAUUCCGGaaua---GCGAC---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.