miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24453 5' -50.8 NC_005264.1 + 135090 0.67 0.988513
Target:  5'- aGACGgGAu--AGGCCUguuacUGCUGGg -3'
miRNA:   3'- -CUGCgCUuauUCCGGAaua--GCGACCg -5'
24453 5' -50.8 NC_005264.1 + 70195 0.66 0.992329
Target:  5'- cGGCGCGA---GGGCCa---CGC-GGCa -3'
miRNA:   3'- -CUGCGCUuauUCCGGaauaGCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 25542 0.75 0.745577
Target:  5'- cGGCGCGGAcAAGGCgCUUGUCGCg--- -3'
miRNA:   3'- -CUGCGCUUaUUCCG-GAAUAGCGaccg -5'
24453 5' -50.8 NC_005264.1 + 90651 0.7 0.940112
Target:  5'- gGGCGCGcg-GAGaCCgcAUUGCUGGCg -3'
miRNA:   3'- -CUGCGCuuaUUCcGGaaUAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 3595 0.67 0.985423
Target:  5'- aGGCGCGAAgaauuaccgccgcggGGGGCCgcgAggGCgGGCg -3'
miRNA:   3'- -CUGCGCUUa--------------UUCCGGaa-UagCGaCCG- -5'
24453 5' -50.8 NC_005264.1 + 72734 0.66 0.993348
Target:  5'- cACGCGGuacacuucGgcGGGCCUgucCGCUGGg -3'
miRNA:   3'- cUGCGCU--------UauUCCGGAauaGCGACCg -5'
24453 5' -50.8 NC_005264.1 + 131706 0.7 0.949333
Target:  5'- --aGCGu---GGGCCUgcgcggcGUUGCUGGCg -3'
miRNA:   3'- cugCGCuuauUCCGGAa------UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 76302 0.66 0.993348
Target:  5'- gGGCGCGGG-GGGGCU-----GCUGGCu -3'
miRNA:   3'- -CUGCGCUUaUUCCGGaauagCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 94721 0.66 0.994255
Target:  5'- -cCGcCGAGUAugagcGcGCCUUGUCGCUGuacGCg -3'
miRNA:   3'- cuGC-GCUUAUu----C-CGGAAUAGCGAC---CG- -5'
24453 5' -50.8 NC_005264.1 + 118071 0.67 0.988513
Target:  5'- aGGCGCGuuucUAAGGCCUacgCGgaGaGCa -3'
miRNA:   3'- -CUGCGCuu--AUUCCGGAauaGCgaC-CG- -5'
24453 5' -50.8 NC_005264.1 + 9610 0.68 0.976638
Target:  5'- cGACGCGAAcUGcgcugagcAGGCCagaucugGUCGUUGGg -3'
miRNA:   3'- -CUGCGCUU-AU--------UCCGGaa-----UAGCGACCg -5'
24453 5' -50.8 NC_005264.1 + 134763 0.69 0.961306
Target:  5'- uGACGCGAGUAAGcCCguguUCGCUuccGCg -3'
miRNA:   3'- -CUGCGCUUAUUCcGGaau-AGCGAc--CG- -5'
24453 5' -50.8 NC_005264.1 + 110166 0.71 0.906319
Target:  5'- -cCGCGGcuuUGGGGCC-UAUC-CUGGCa -3'
miRNA:   3'- cuGCGCUu--AUUCCGGaAUAGcGACCG- -5'
24453 5' -50.8 NC_005264.1 + 137399 0.72 0.884567
Target:  5'- uACGCGGuccuaggcacgAAGGCCaaucgUAUCGcCUGGCg -3'
miRNA:   3'- cUGCGCUua---------UUCCGGa----AUAGC-GACCG- -5'
24453 5' -50.8 NC_005264.1 + 147798 0.77 0.630867
Target:  5'- uGCGCGAcgGaggugagguAGGCCUUGUCGuCUGGg -3'
miRNA:   3'- cUGCGCUuaU---------UCCGGAAUAGC-GACCg -5'
24453 5' -50.8 NC_005264.1 + 19475 0.67 0.988513
Target:  5'- cGCGCGggUAgcuuauagGGGC---AUCGgUGGCg -3'
miRNA:   3'- cUGCGCuuAU--------UCCGgaaUAGCgACCG- -5'
24453 5' -50.8 NC_005264.1 + 95576 0.66 0.992329
Target:  5'- aGCGCGAcucaAUAAGGCUcucUCG-UGGCu -3'
miRNA:   3'- cUGCGCU----UAUUCCGGaauAGCgACCG- -5'
24453 5' -50.8 NC_005264.1 + 91558 0.66 0.991189
Target:  5'- gGGCGCGGcggGGGGCacgaggCUUGUCGCgGaGCu -3'
miRNA:   3'- -CUGCGCUua-UUCCG------GAAUAGCGaC-CG- -5'
24453 5' -50.8 NC_005264.1 + 35898 0.66 0.994255
Target:  5'- gGGCGUGGu----GUCgggGUCGCUGGCu -3'
miRNA:   3'- -CUGCGCUuauucCGGaa-UAGCGACCG- -5'
24453 5' -50.8 NC_005264.1 + 128637 0.68 0.976638
Target:  5'- cGACGCGAAcUGcgcugagcAGGCCagaucugGUCGUUGGg -3'
miRNA:   3'- -CUGCGCUU-AU--------UCCGGaa-----UAGCGACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.