miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24455 3' -54.7 NC_005264.1 + 129590 0.66 0.951136
Target:  5'- cGCucuGCAGgcgCUGCG-GCgCGGCGGCg -3'
miRNA:   3'- cUGu--UGUCaa-GAUGCgCG-GUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 4072 0.66 0.951136
Target:  5'- cGACAGCGGggCUguugcacggGCgGCGUC-GCGGCa -3'
miRNA:   3'- -CUGUUGUCaaGA---------UG-CGCGGuCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 45411 0.66 0.951136
Target:  5'- gGGCGGCGcc-CUGCGCGCC-GCGacaGCCc -3'
miRNA:   3'- -CUGUUGUcaaGAUGCGCGGuCGC---CGG- -5'
24455 3' -54.7 NC_005264.1 + 98783 0.66 0.951136
Target:  5'- cGGCuGACAGagCUGCGCGagaucggguaUCGGCGGUg -3'
miRNA:   3'- -CUG-UUGUCaaGAUGCGC----------GGUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 153274 0.66 0.951136
Target:  5'- gGGCGAC-GUUUUACcUGCUAGCcGCCa -3'
miRNA:   3'- -CUGUUGuCAAGAUGcGCGGUCGcCGG- -5'
24455 3' -54.7 NC_005264.1 + 12915 0.66 0.951136
Target:  5'- uGCGAUGGUg-UGCGUgGCCAucGUGGCCa -3'
miRNA:   3'- cUGUUGUCAagAUGCG-CGGU--CGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 123099 0.66 0.951136
Target:  5'- cGACAGCGGggCUguugcacggGCgGCGUC-GCGGCa -3'
miRNA:   3'- -CUGUUGUCaaGA---------UG-CGCGGuCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 133962 0.66 0.951136
Target:  5'- uGGCAGCAGUUC-AUGaaaccuaGCCcgcGCgGGCCg -3'
miRNA:   3'- -CUGUUGUCAAGaUGCg------CGGu--CG-CCGG- -5'
24455 3' -54.7 NC_005264.1 + 128092 0.66 0.946885
Target:  5'- cGACAGCGGcgaccgGCGCGCCGGgaagaacGCCa -3'
miRNA:   3'- -CUGUUGUCaaga--UGCGCGGUCgc-----CGG- -5'
24455 3' -54.7 NC_005264.1 + 30624 0.66 0.946885
Target:  5'- cGGCGACGGaUCcGCGCGC-AGCGcGUa -3'
miRNA:   3'- -CUGUUGUCaAGaUGCGCGgUCGC-CGg -5'
24455 3' -54.7 NC_005264.1 + 98152 0.66 0.946885
Target:  5'- gGGCgAGCAcGgcCUGCcCGCCGGCaGGCCc -3'
miRNA:   3'- -CUG-UUGU-CaaGAUGcGCGGUCG-CCGG- -5'
24455 3' -54.7 NC_005264.1 + 16208 0.66 0.946885
Target:  5'- gGACAACGGggg-ACGCGCC-GCGcuacccucugaGCCc -3'
miRNA:   3'- -CUGUUGUCaagaUGCGCGGuCGC-----------CGG- -5'
24455 3' -54.7 NC_005264.1 + 75372 0.66 0.946885
Target:  5'- aGC-ACGGUccauUCggagucguggUGCGCGCCAccgucugcGCGGCCg -3'
miRNA:   3'- cUGuUGUCA----AG----------AUGCGCGGU--------CGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 77178 0.66 0.946885
Target:  5'- cACAAC-GUUCauguCGCGCUcGCgGGCCa -3'
miRNA:   3'- cUGUUGuCAAGau--GCGCGGuCG-CCGG- -5'
24455 3' -54.7 NC_005264.1 + 138393 0.66 0.946885
Target:  5'- aACAAgcCAGUcgCUAUGgGCCauAGCGGCg -3'
miRNA:   3'- cUGUU--GUCAa-GAUGCgCGG--UCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 149651 0.66 0.946885
Target:  5'- cGGCGACGGaUCcGCGCGC-AGCGcGUa -3'
miRNA:   3'- -CUGUUGUCaAGaUGCGCGgUCGC-CGg -5'
24455 3' -54.7 NC_005264.1 + 133573 0.66 0.946447
Target:  5'- cGCGcACAGUccaacaaUCUGCGCGCC-GCaGUCu -3'
miRNA:   3'- cUGU-UGUCA-------AGAUGCGCGGuCGcCGG- -5'
24455 3' -54.7 NC_005264.1 + 59704 0.66 0.942398
Target:  5'- uGC-GCcGcgCgcCGCGCCGGCGGCUa -3'
miRNA:   3'- cUGuUGuCaaGauGCGCGGUCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 127328 0.66 0.942398
Target:  5'- gGGCGACGGgggCaccUGCGCC-GCGGCg -3'
miRNA:   3'- -CUGUUGUCaa-Gau-GCGCGGuCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 159997 0.66 0.942398
Target:  5'- gGGCGACGGcgCgaGCGCGaCCGGCccuccGCCa -3'
miRNA:   3'- -CUGUUGUCaaGa-UGCGC-GGUCGc----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.