miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24455 3' -54.7 NC_005264.1 + 72877 1.13 0.002249
Target:  5'- aGACAACAGUUCUACGCGCCAGCGGCCg -3'
miRNA:   3'- -CUGUUGUCAAGAUGCGCGGUCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 27921 0.83 0.193422
Target:  5'- cGACGACGaccgcgguguuggcGUUCUGCGCGUCGGUGGUCg -3'
miRNA:   3'- -CUGUUGU--------------CAAGAUGCGCGGUCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 56503 0.82 0.226208
Target:  5'- aGCGGCAGUcagaaaauaucaUCgGCGCGCCGGCGGCa -3'
miRNA:   3'- cUGUUGUCA------------AGaUGCGCGGUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 65115 0.77 0.403498
Target:  5'- --gGACAGcUCUugGCGCCuGGCGGCg -3'
miRNA:   3'- cugUUGUCaAGAugCGCGG-UCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 42024 0.77 0.412191
Target:  5'- cGGCGGCAGUgUCgACGCGCaC-GCGGCCu -3'
miRNA:   3'- -CUGUUGUCA-AGaUGCGCG-GuCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 145528 0.76 0.44809
Target:  5'- cGACAuugGCAGgUCU-CGCGCUAGCGGUa -3'
miRNA:   3'- -CUGU---UGUCaAGAuGCGCGGUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 20279 0.75 0.534593
Target:  5'- aGGgGACcg-UCUGCGCGCUuGCGGCCc -3'
miRNA:   3'- -CUgUUGucaAGAUGCGCGGuCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 86208 0.74 0.544599
Target:  5'- -uCGAUGGUcuucUCUGCGUGCUcgugGGCGGCCg -3'
miRNA:   3'- cuGUUGUCA----AGAUGCGCGG----UCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 56064 0.74 0.554664
Target:  5'- -uCAACAGUUCUGCGaCGCCcGCugacGCCg -3'
miRNA:   3'- cuGUUGUCAAGAUGC-GCGGuCGc---CGG- -5'
24455 3' -54.7 NC_005264.1 + 149195 0.74 0.574951
Target:  5'- aGGCAgaGCGGUuagCUGgguucguaguagUGCGCCAGCGGUCa -3'
miRNA:   3'- -CUGU--UGUCAa--GAU------------GCGCGGUCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 65568 0.74 0.584137
Target:  5'- aGGCAGCGGccaCUAcCGUGCCaaggcccGGCGGCCa -3'
miRNA:   3'- -CUGUUGUCaa-GAU-GCGCGG-------UCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 94934 0.74 0.585159
Target:  5'- uGCGGCcGUuaUCUACGCGUCGGUGGUg -3'
miRNA:   3'- cUGUUGuCA--AGAUGCGCGGUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 162686 0.74 0.595402
Target:  5'- uACGGuCGGcgcgCUGCGCGCCggcguuaaGGCGGCCg -3'
miRNA:   3'- cUGUU-GUCaa--GAUGCGCGG--------UCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 43660 0.74 0.595402
Target:  5'- uACGGuCGGcgcgCUGCGCGCCggcguuaaGGCGGCCg -3'
miRNA:   3'- cUGUU-GUCaa--GAUGCGCGG--------UCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 69119 0.73 0.636572
Target:  5'- aGCAACAGguugUCUGC-CGCCugaucuGUGGCCc -3'
miRNA:   3'- cUGUUGUCa---AGAUGcGCGGu-----CGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 13421 0.73 0.644816
Target:  5'- aGCAACAGccaaaggcccagUCUACGCGCgAGCGGa- -3'
miRNA:   3'- cUGUUGUCa-----------AGAUGCGCGgUCGCCgg -5'
24455 3' -54.7 NC_005264.1 + 36964 0.73 0.646876
Target:  5'- cACGACAGaggUUGCGCGCUGGC-GCCa -3'
miRNA:   3'- cUGUUGUCaa-GAUGCGCGGUCGcCGG- -5'
24455 3' -54.7 NC_005264.1 + 54121 0.73 0.646876
Target:  5'- aGugGAgAGUUCgaGCGCGCCGG-GGUCg -3'
miRNA:   3'- -CugUUgUCAAGa-UGCGCGGUCgCCGG- -5'
24455 3' -54.7 NC_005264.1 + 155991 0.73 0.646876
Target:  5'- cACGACAGaggUUGCGCGCUGGC-GCCa -3'
miRNA:   3'- cUGUUGUCaa-GAUGCGCGGUCGcCGG- -5'
24455 3' -54.7 NC_005264.1 + 113871 0.73 0.646876
Target:  5'- --gAAgAGUUCUGCGCcuacugcuuggaGCgCAGCGGCCc -3'
miRNA:   3'- cugUUgUCAAGAUGCG------------CG-GUCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.