miRNA display CGI


Results 21 - 40 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24455 3' -54.7 NC_005264.1 + 135203 0.66 0.942398
Target:  5'- uGGCcaAACgAGUUC-GCGCGaCCAGCcGCCu -3'
miRNA:   3'- -CUG--UUG-UCAAGaUGCGC-GGUCGcCGG- -5'
24455 3' -54.7 NC_005264.1 + 59704 0.66 0.942398
Target:  5'- uGC-GCcGcgCgcCGCGCCGGCGGCUa -3'
miRNA:   3'- cUGuUGuCaaGauGCGCGGUCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 120903 0.66 0.942398
Target:  5'- cGCGGCGGaaaaaCUACGC-CgAGCGGCUu -3'
miRNA:   3'- cUGUUGUCaa---GAUGCGcGgUCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 100031 0.66 0.942398
Target:  5'- cGCGGCGGcgCUGCuGCGuCCGGUGGa- -3'
miRNA:   3'- cUGUUGUCaaGAUG-CGC-GGUCGCCgg -5'
24455 3' -54.7 NC_005264.1 + 40970 0.66 0.942398
Target:  5'- gGGCGACGGcgCgaGCGCGaCCGGCccuccGCCa -3'
miRNA:   3'- -CUGUUGUCaaGa-UGCGC-GGUCGc----CGG- -5'
24455 3' -54.7 NC_005264.1 + 94582 0.66 0.942398
Target:  5'- cGGCAGCAGcag-GC-CGCCcGCGGCg -3'
miRNA:   3'- -CUGUUGUCaagaUGcGCGGuCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 140943 0.66 0.942398
Target:  5'- aGAUAGaAGccugccaUUACGCGCCAGCucGGCCu -3'
miRNA:   3'- -CUGUUgUCaa-----GAUGCGCGGUCG--CCGG- -5'
24455 3' -54.7 NC_005264.1 + 105651 0.66 0.937672
Target:  5'- uGGC-ACGGgcg-GCGCuuuGCCGGCGGCa -3'
miRNA:   3'- -CUGuUGUCaagaUGCG---CGGUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 86833 0.66 0.937672
Target:  5'- cGACuuCAGaUCUucuaggggGCGCcaGCUAGCGGCg -3'
miRNA:   3'- -CUGuuGUCaAGA--------UGCG--CGGUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 140851 0.66 0.937672
Target:  5'- -uCAAgAGgcg-ACGacaGCCGGCGGCCc -3'
miRNA:   3'- cuGUUgUCaagaUGCg--CGGUCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 49495 0.66 0.937672
Target:  5'- gGGCAGCAGgugcgcgUCUucACGUGCCuGCuGCa -3'
miRNA:   3'- -CUGUUGUCa------AGA--UGCGCGGuCGcCGg -5'
24455 3' -54.7 NC_005264.1 + 154873 0.66 0.937672
Target:  5'- aGCAACGGaccUCUAgGCagcgacaaagacGCC-GCGGCCg -3'
miRNA:   3'- cUGUUGUCa--AGAUgCG------------CGGuCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 144424 0.66 0.937672
Target:  5'- aGCGAgAGg---GCGCGCCuGCgccGGCCg -3'
miRNA:   3'- cUGUUgUCaagaUGCGCGGuCG---CCGG- -5'
24455 3' -54.7 NC_005264.1 + 110876 0.66 0.937672
Target:  5'- aGCGugAGcgCgccgacacgACGCGUUAGCGGCa -3'
miRNA:   3'- cUGUugUCaaGa--------UGCGCGGUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 86972 0.66 0.932704
Target:  5'- aGACGGgGGgcgUaaGCGCGCCuucaAGgGGCCa -3'
miRNA:   3'- -CUGUUgUCa--AgaUGCGCGG----UCgCCGG- -5'
24455 3' -54.7 NC_005264.1 + 67475 0.66 0.932704
Target:  5'- --uGGCAGUUUggcggcACGCGCCGcccGuCGGCCc -3'
miRNA:   3'- cugUUGUCAAGa-----UGCGCGGU---C-GCCGG- -5'
24455 3' -54.7 NC_005264.1 + 40038 0.67 0.929607
Target:  5'- cGGCGGCGGUcgaccaagggcccgCaGCGCcCCGGCGGCa -3'
miRNA:   3'- -CUGUUGUCAa-------------GaUGCGcGGUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 159065 0.67 0.929607
Target:  5'- cGGCGGCGGUcgaccaagggcccgCaGCGCcCCGGCGGCa -3'
miRNA:   3'- -CUGUUGUCAa-------------GaUGCGcGGUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 134399 0.67 0.927494
Target:  5'- --gAGCAGUUC-ACG-GCCcGCGGCa -3'
miRNA:   3'- cugUUGUCAAGaUGCgCGGuCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 91064 0.67 0.927494
Target:  5'- --aGGCGcUUCUGCaacgGCGCCAGCaGGUCg -3'
miRNA:   3'- cugUUGUcAAGAUG----CGCGGUCG-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.