miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24455 3' -54.7 NC_005264.1 + 780 0.68 0.881485
Target:  5'- cGAC-ACGGUUCUugcgguaGCGCuCCAguacggcugggugcGCGGCCg -3'
miRNA:   3'- -CUGuUGUCAAGA-------UGCGcGGU--------------CGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 1193 0.67 0.922042
Target:  5'- cGCAGCGGacCgg-GCGUCcGCGGCCa -3'
miRNA:   3'- cUGUUGUCaaGaugCGCGGuCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 4072 0.66 0.951136
Target:  5'- cGACAGCGGggCUguugcacggGCgGCGUC-GCGGCa -3'
miRNA:   3'- -CUGUUGUCaaGA---------UG-CGCGGuCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 6068 0.71 0.73802
Target:  5'- gGACAGCAGguaggUCUuuuggcuCGCGUCguAGCGGCg -3'
miRNA:   3'- -CUGUUGUCa----AGAu------GCGCGG--UCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 6832 0.72 0.698044
Target:  5'- aGGCGGCGGcgaCUAUgGCGCCAGCGcGCa -3'
miRNA:   3'- -CUGUUGUCaa-GAUG-CGCGGUCGC-CGg -5'
24455 3' -54.7 NC_005264.1 + 7014 0.69 0.8577
Target:  5'- cGGCGGCuccucuccAGUacccccuuuucguauUCUGCGCGCaAGCGGCg -3'
miRNA:   3'- -CUGUUG--------UCA---------------AGAUGCGCGgUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 8301 0.66 0.942398
Target:  5'- gGGCGACGGgggCaccUGCGCC-GCGGCg -3'
miRNA:   3'- -CUGUUGUCaa-Gau-GCGCGGuCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 9871 0.7 0.767054
Target:  5'- gGGC-GCGGUcCcgGCGCGCCA-CGGCCu -3'
miRNA:   3'- -CUGuUGUCAaGa-UGCGCGGUcGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 10706 0.71 0.728143
Target:  5'- -uCGACAGUa-UGCGCGUCAGCGaGCa -3'
miRNA:   3'- cuGUUGUCAagAUGCGCGGUCGC-CGg -5'
24455 3' -54.7 NC_005264.1 + 12915 0.66 0.951136
Target:  5'- uGCGAUGGUg-UGCGUgGCCAucGUGGCCa -3'
miRNA:   3'- cUGUUGUCAagAUGCG-CGGU--CGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 13269 0.69 0.830117
Target:  5'- gGACGACgAGggUU-CGCGCCAGCgaGGCg -3'
miRNA:   3'- -CUGUUG-UCaaGAuGCGCGGUCG--CCGg -5'
24455 3' -54.7 NC_005264.1 + 13421 0.73 0.644816
Target:  5'- aGCAACAGccaaaggcccagUCUACGCGCgAGCGGa- -3'
miRNA:   3'- cUGUUGUCa-----------AGAUGCGCGgUCGCCgg -5'
24455 3' -54.7 NC_005264.1 + 14434 0.71 0.728143
Target:  5'- aGCAACugcgaAGUucUCUGCGCGUUAGuUGGCCu -3'
miRNA:   3'- cUGUUG-----UCA--AGAUGCGCGGUC-GCCGG- -5'
24455 3' -54.7 NC_005264.1 + 15264 0.68 0.877196
Target:  5'- uGCGACcGUUCcccguCGCacacGUCGGCGGCCa -3'
miRNA:   3'- cUGUUGuCAAGau---GCG----CGGUCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 16208 0.66 0.946885
Target:  5'- gGACAACGGggg-ACGCGCC-GCGcuacccucugaGCCc -3'
miRNA:   3'- -CUGUUGUCaagaUGCGCGGuCGC-----------CGG- -5'
24455 3' -54.7 NC_005264.1 + 16865 0.71 0.747804
Target:  5'- cGC-GCAGUUCguauuCGCGCCGGCgaaGGUCg -3'
miRNA:   3'- cUGuUGUCAAGau---GCGCGGUCG---CCGG- -5'
24455 3' -54.7 NC_005264.1 + 20279 0.75 0.534593
Target:  5'- aGGgGACcg-UCUGCGCGCUuGCGGCCc -3'
miRNA:   3'- -CUgUUGucaAGAUGCGCGGuCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 21245 0.68 0.862327
Target:  5'- uGACGACGGcUCgagugUGCGCGCC-GCGGa- -3'
miRNA:   3'- -CUGUUGUCaAG-----AUGCGCGGuCGCCgg -5'
24455 3' -54.7 NC_005264.1 + 21322 0.67 0.922042
Target:  5'- uGGguGCAGUUgUggcgcccguagAUGCGCCGG-GGCCg -3'
miRNA:   3'- -CUguUGUCAAgA-----------UGCGCGGUCgCCGG- -5'
24455 3' -54.7 NC_005264.1 + 21754 0.69 0.846617
Target:  5'- cGGCGGCGGccgUCUugaGCGCCguaacuuuGGCGGCa -3'
miRNA:   3'- -CUGUUGUCa--AGAug-CGCGG--------UCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.