miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24455 3' -54.7 NC_005264.1 + 16865 0.71 0.747804
Target:  5'- cGC-GCAGUUCguauuCGCGCCGGCgaaGGUCg -3'
miRNA:   3'- cUGuUGUCAAGau---GCGCGGUCG---CCGG- -5'
24455 3' -54.7 NC_005264.1 + 151394 0.72 0.677682
Target:  5'- --gGGCuGUUCUgGCGaggauGCCGGCGGCCg -3'
miRNA:   3'- cugUUGuCAAGA-UGCg----CGGUCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 57486 0.72 0.687886
Target:  5'- cGGCGGCGGcgaagaugCUgGCGCGCgCGGCGGCg -3'
miRNA:   3'- -CUGUUGUCaa------GA-UGCGCG-GUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 79705 0.72 0.698044
Target:  5'- -cCAugAGggCagACGCGCCuccGCGGCCu -3'
miRNA:   3'- cuGUugUCaaGa-UGCGCGGu--CGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 125858 0.72 0.698044
Target:  5'- aGGCGGCGGcgaCUAUgGCGCCAGCGcGCa -3'
miRNA:   3'- -CUGUUGUCaa-GAUG-CGCGGUCGC-CGg -5'
24455 3' -54.7 NC_005264.1 + 129733 0.72 0.698044
Target:  5'- -uCGACAGU--UGCGCGUCAGCGaGCa -3'
miRNA:   3'- cuGUUGUCAagAUGCGCGGUCGC-CGg -5'
24455 3' -54.7 NC_005264.1 + 24180 0.71 0.718181
Target:  5'- cGGCcGCGGUcgguaaagUCUgGCGCgguGCCGGUGGCCg -3'
miRNA:   3'- -CUGuUGUCA--------AGA-UGCG---CGGUCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 14434 0.71 0.728143
Target:  5'- aGCAACugcgaAGUucUCUGCGCGUUAGuUGGCCu -3'
miRNA:   3'- cUGUUG-----UCA--AGAUGCGCGGUC-GCCGG- -5'
24455 3' -54.7 NC_005264.1 + 125095 0.71 0.73802
Target:  5'- gGACAGCAGguaggUCUuuuggcuCGCGUCguAGCGGCg -3'
miRNA:   3'- -CUGUUGUCa----AGAu------GCGCGG--UCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 43675 0.72 0.677682
Target:  5'- --gAACcGUUCuUugGUGCCGGCGGCa -3'
miRNA:   3'- cugUUGuCAAG-AugCGCGGUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 93841 0.72 0.657168
Target:  5'- uGGCGACAGggCcGCGgGCCAcUGGCCc -3'
miRNA:   3'- -CUGUUGUCaaGaUGCgCGGUcGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 155991 0.73 0.646876
Target:  5'- cACGACAGaggUUGCGCGCUGGC-GCCa -3'
miRNA:   3'- cUGUUGUCaa-GAUGCGCGGUCGcCGG- -5'
24455 3' -54.7 NC_005264.1 + 42024 0.77 0.412191
Target:  5'- cGGCGGCAGUgUCgACGCGCaC-GCGGCCu -3'
miRNA:   3'- -CUGUUGUCA-AGaUGCGCG-GuCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 145528 0.76 0.44809
Target:  5'- cGACAuugGCAGgUCU-CGCGCUAGCGGUa -3'
miRNA:   3'- -CUGU---UGUCaAGAuGCGCGGUCGCCGg -5'
24455 3' -54.7 NC_005264.1 + 20279 0.75 0.534593
Target:  5'- aGGgGACcg-UCUGCGCGCUuGCGGCCc -3'
miRNA:   3'- -CUgUUGucaAGAUGCGCGGuCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 56064 0.74 0.554664
Target:  5'- -uCAACAGUUCUGCGaCGCCcGCugacGCCg -3'
miRNA:   3'- cuGUUGUCAAGAUGC-GCGGuCGc---CGG- -5'
24455 3' -54.7 NC_005264.1 + 65568 0.74 0.584137
Target:  5'- aGGCAGCGGccaCUAcCGUGCCaaggcccGGCGGCCa -3'
miRNA:   3'- -CUGUUGUCaa-GAU-GCGCGG-------UCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 162686 0.74 0.595402
Target:  5'- uACGGuCGGcgcgCUGCGCGCCggcguuaaGGCGGCCg -3'
miRNA:   3'- cUGUU-GUCaa--GAUGCGCGG--------UCGCCGG- -5'
24455 3' -54.7 NC_005264.1 + 13421 0.73 0.644816
Target:  5'- aGCAACAGccaaaggcccagUCUACGCGCgAGCGGa- -3'
miRNA:   3'- cUGUUGUCa-----------AGAUGCGCGgUCGCCgg -5'
24455 3' -54.7 NC_005264.1 + 113871 0.73 0.646876
Target:  5'- --gAAgAGUUCUGCGCcuacugcuuggaGCgCAGCGGCCc -3'
miRNA:   3'- cugUUgUCAAGAUGCG------------CG-GUCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.