miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24455 5' -52.5 NC_005264.1 + 136358 0.66 0.983334
Target:  5'- ----cGGGCG-CugGgcGCUGCCGg- -3'
miRNA:   3'- ccuuaCUCGCuGugCaaCGACGGCaa -5'
24455 5' -52.5 NC_005264.1 + 116321 0.66 0.983334
Target:  5'- gGGAAcuuUGAGgGAUGCGUUcuaGCUGCgGa- -3'
miRNA:   3'- -CCUU---ACUCgCUGUGCAA---CGACGgCaa -5'
24455 5' -52.5 NC_005264.1 + 125992 0.66 0.983334
Target:  5'- cGGAGgagGGGCaGACA-GUUGCUGUCu-- -3'
miRNA:   3'- -CCUUa--CUCG-CUGUgCAACGACGGcaa -5'
24455 5' -52.5 NC_005264.1 + 6165 0.66 0.983334
Target:  5'- cGGGcUGuacaacAGCGACGCGUcGCUGuuGa- -3'
miRNA:   3'- -CCUuAC------UCGCUGUGCAaCGACggCaa -5'
24455 5' -52.5 NC_005264.1 + 36244 0.66 0.982941
Target:  5'- gGGGcgGAGCcGCACGUgGCggaagcggguagGCCGUc -3'
miRNA:   3'- -CCUuaCUCGcUGUGCAaCGa-----------CGGCAa -5'
24455 5' -52.5 NC_005264.1 + 155271 0.66 0.982941
Target:  5'- gGGGcgGAGCcGCACGUgGCggaagcggguagGCCGUc -3'
miRNA:   3'- -CCUuaCUCGcUGUGCAaCGa-----------CGGCAa -5'
24455 5' -52.5 NC_005264.1 + 162188 0.66 0.982541
Target:  5'- gGGAggGGGgGGCGCGUgagccucuaucgcGCUGCCu-- -3'
miRNA:   3'- -CCUuaCUCgCUGUGCAa------------CGACGGcaa -5'
24455 5' -52.5 NC_005264.1 + 43161 0.66 0.982541
Target:  5'- gGGAggGGGgGGCGCGUgagccucuaucgcGCUGCCu-- -3'
miRNA:   3'- -CCUuaCUCgCUGUGCAa------------CGACGGcaa -5'
24455 5' -52.5 NC_005264.1 + 30361 0.66 0.979079
Target:  5'- ------uGCGGcCACGUgGCUGCCGUa -3'
miRNA:   3'- ccuuacuCGCU-GUGCAaCGACGGCAa -5'
24455 5' -52.5 NC_005264.1 + 43230 0.66 0.979079
Target:  5'- uGAAUGcaGGCGGCACG-UGCcGCCu-- -3'
miRNA:   3'- cCUUAC--UCGCUGUGCaACGaCGGcaa -5'
24455 5' -52.5 NC_005264.1 + 47663 0.67 0.971547
Target:  5'- cGGAGUGAGaaucgcaGACGCGUUgGCgguuuccgcuuuugcGCCGUc -3'
miRNA:   3'- -CCUUACUCg------CUGUGCAA-CGa--------------CGGCAa -5'
24455 5' -52.5 NC_005264.1 + 42177 0.67 0.968234
Target:  5'- cGGAAaGAGaUGGCAgGUUGgaGCCGc- -3'
miRNA:   3'- -CCUUaCUC-GCUGUgCAACgaCGGCaa -5'
24455 5' -52.5 NC_005264.1 + 161204 0.67 0.968234
Target:  5'- cGGAAaGAGaUGGCAgGUUGgaGCCGc- -3'
miRNA:   3'- -CCUUaCUC-GCUGUgCAACgaCGGCaa -5'
24455 5' -52.5 NC_005264.1 + 27913 0.67 0.96792
Target:  5'- aGggUGAGCGACgacgaccGCGgUGUUGgCGUUc -3'
miRNA:   3'- cCuuACUCGCUG-------UGCaACGACgGCAA- -5'
24455 5' -52.5 NC_005264.1 + 155323 0.67 0.964993
Target:  5'- aGGAGaGGGCgGACGuCGUcgcuaucGCUGCCGUa -3'
miRNA:   3'- -CCUUaCUCG-CUGU-GCAa------CGACGGCAa -5'
24455 5' -52.5 NC_005264.1 + 36296 0.67 0.964993
Target:  5'- aGGAGaGGGCgGACGuCGUcgcuaucGCUGCCGUa -3'
miRNA:   3'- -CCUUaCUCG-CUGU-GCAa------CGACGGCAa -5'
24455 5' -52.5 NC_005264.1 + 127990 0.67 0.961526
Target:  5'- aGAGUuAGCGuACACGUcGCUGuuGUa -3'
miRNA:   3'- cCUUAcUCGC-UGUGCAaCGACggCAa -5'
24455 5' -52.5 NC_005264.1 + 18264 0.67 0.957829
Target:  5'- --cAUGGGCGACACGg----GCCGUa -3'
miRNA:   3'- ccuUACUCGCUGUGCaacgaCGGCAa -5'
24455 5' -52.5 NC_005264.1 + 89299 0.69 0.919467
Target:  5'- -aGAUGGGCGACACGUga-UGCCc-- -3'
miRNA:   3'- ccUUACUCGCUGUGCAacgACGGcaa -5'
24455 5' -52.5 NC_005264.1 + 5206 0.69 0.913545
Target:  5'- cGGAAgccGCGaACACGUUGCUGUCc-- -3'
miRNA:   3'- -CCUUacuCGC-UGUGCAACGACGGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.