miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24456 5' -63.1 NC_005264.1 + 97437 0.76 0.191473
Target:  5'- uGCGGGCGCCGCCG--CGGAUC-UGa -3'
miRNA:   3'- cCGCCCGCGGCGGCcaGCCUAGcACa -5'
24456 5' -63.1 NC_005264.1 + 5050 0.66 0.667453
Target:  5'- cGUGGGCGCCGCCuagcuGGgaagacgccgaUGGAaCGUGg -3'
miRNA:   3'- cCGCCCGCGGCGG-----CCa----------GCCUaGCACa -5'
24456 5' -63.1 NC_005264.1 + 65406 0.66 0.657883
Target:  5'- uGCGGguaauuuccGCGCC-CUGGUCaaGGAUUGUGUc -3'
miRNA:   3'- cCGCC---------CGCGGcGGCCAG--CCUAGCACA- -5'
24456 5' -63.1 NC_005264.1 + 23931 0.66 0.642536
Target:  5'- cGGCGGuucuggucGCGCCGCCgaugGGUauguggggcgguuggUGGGUgGUGUa -3'
miRNA:   3'- -CCGCC--------CGCGGCGG----CCA---------------GCCUAgCACA- -5'
24456 5' -63.1 NC_005264.1 + 34141 0.66 0.638695
Target:  5'- -aCGGGCG-CGuaGGcuUCGGGUCGUGg -3'
miRNA:   3'- ccGCCCGCgGCggCC--AGCCUAGCACa -5'
24456 5' -63.1 NC_005264.1 + 150053 0.67 0.590757
Target:  5'- gGGCGacGGUGCCGCCuagCGG-UCGUGc -3'
miRNA:   3'- -CCGC--CCGCGGCGGccaGCCuAGCACa -5'
24456 5' -63.1 NC_005264.1 + 75729 0.67 0.590757
Target:  5'- cGCGGGCGCCggagGCCaGUCuGGGUgCGUu- -3'
miRNA:   3'- cCGCCCGCGG----CGGcCAG-CCUA-GCAca -5'
24456 5' -63.1 NC_005264.1 + 56417 0.67 0.590757
Target:  5'- aGCGcGGCGCCGUCGaGcuUCGGGUCu--- -3'
miRNA:   3'- cCGC-CCGCGGCGGC-C--AGCCUAGcaca -5'
24456 5' -63.1 NC_005264.1 + 136359 0.67 0.581225
Target:  5'- gGGCgcuGGGCGCUGCCGG-CGcGAauagCGcUGUg -3'
miRNA:   3'- -CCG---CCCGCGGCGGCCaGC-CUa---GC-ACA- -5'
24456 5' -63.1 NC_005264.1 + 149884 0.67 0.571725
Target:  5'- cGGCGGcGCGCCGCCcGGUaGGcaacggCGUc- -3'
miRNA:   3'- -CCGCC-CGCGGCGG-CCAgCCua----GCAca -5'
24456 5' -63.1 NC_005264.1 + 149428 0.68 0.524893
Target:  5'- cGGCGGuCGCgCGCCGGUgCGGAgagcugCGg-- -3'
miRNA:   3'- -CCGCCcGCG-GCGGCCA-GCCUa-----GCaca -5'
24456 5' -63.1 NC_005264.1 + 154833 0.71 0.379646
Target:  5'- uGGCGGGCGCCucuGCCGGccccgcaauggCGGccCGUGc -3'
miRNA:   3'- -CCGCCCGCGG---CGGCCa----------GCCuaGCACa -5'
24456 5' -63.1 NC_005264.1 + 385 0.7 0.387431
Target:  5'- uGGgGGGCaG-CGCCGG-CGcGGUCGUGUa -3'
miRNA:   3'- -CCgCCCG-CgGCGGCCaGC-CUAGCACA- -5'
24456 5' -63.1 NC_005264.1 + 16564 0.7 0.395321
Target:  5'- cGGUGGGCGgCGCCGGggcggCGGcgCa--- -3'
miRNA:   3'- -CCGCCCGCgGCGGCCa----GCCuaGcaca -5'
24456 5' -63.1 NC_005264.1 + 94680 0.7 0.41878
Target:  5'- cGGCGGGCGCCGCaacguucacauaaCGGcCGuGGUCa--- -3'
miRNA:   3'- -CCGCCCGCGGCG-------------GCCaGC-CUAGcaca -5'
24456 5' -63.1 NC_005264.1 + 150828 0.7 0.436285
Target:  5'- cGGCGGuCGCCGCCGca-GG-UCGUGa -3'
miRNA:   3'- -CCGCCcGCGGCGGCcagCCuAGCACa -5'
24456 5' -63.1 NC_005264.1 + 3618 0.69 0.47959
Target:  5'- cGGUGGGCGCUGUgGG-CGGG--GUGg -3'
miRNA:   3'- -CCGCCCGCGGCGgCCaGCCUagCACa -5'
24456 5' -63.1 NC_005264.1 + 129560 0.68 0.524893
Target:  5'- uGUGcGGCGCCGCCcucagGGgcgCGGAUCGc-- -3'
miRNA:   3'- cCGC-CCGCGGCGG-----CCa--GCCUAGCaca -5'
24456 5' -63.1 NC_005264.1 + 72459 1.09 0.000861
Target:  5'- cGGCGGGCGCCGCCGGUCGGAUCGUGUa -3'
miRNA:   3'- -CCGCCCGCGGCGGCCAGCCUAGCACA- -5'
24456 5' -63.1 NC_005264.1 + 129549 0.66 0.648295
Target:  5'- gGGCuuaGGCGUCGCCG--CGuGGUCGUGg -3'
miRNA:   3'- -CCGc--CCGCGGCGGCcaGC-CUAGCACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.