miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24457 3' -55.6 NC_005264.1 + 32223 0.66 0.935054
Target:  5'- cGACUCG-CCGCuuauuauUCCAUAGAUgacGGCg -3'
miRNA:   3'- -UUGAGCaGGCGccu----AGGUGUCUA---CCG- -5'
24457 3' -55.6 NC_005264.1 + 25736 0.66 0.935054
Target:  5'- uACUCGgUCGCGGAgaggCCAguGAUGcucacGCg -3'
miRNA:   3'- uUGAGCaGGCGCCUa---GGUguCUAC-----CG- -5'
24457 3' -55.6 NC_005264.1 + 141545 0.66 0.929991
Target:  5'- ----aGUCCGCcauGGUCCGCgucccccgcuggAGAUGGCg -3'
miRNA:   3'- uugagCAGGCGc--CUAGGUG------------UCUACCG- -5'
24457 3' -55.6 NC_005264.1 + 93818 0.66 0.929991
Target:  5'- cGACUCG-CCGUGG---CACAguacGAUGGCg -3'
miRNA:   3'- -UUGAGCaGGCGCCuagGUGU----CUACCG- -5'
24457 3' -55.6 NC_005264.1 + 47638 0.66 0.926838
Target:  5'- uACUCGUgcggcuUCGCGGAUgucgcggagugagaaUCGCAGAcgcguUGGCg -3'
miRNA:   3'- uUGAGCA------GGCGCCUA---------------GGUGUCU-----ACCG- -5'
24457 3' -55.6 NC_005264.1 + 115786 0.66 0.917438
Target:  5'- cAGCUUGUCCcagcccauagacacGUGGGaCCGCGGGaGGCc -3'
miRNA:   3'- -UUGAGCAGG--------------CGCCUaGGUGUCUaCCG- -5'
24457 3' -55.6 NC_005264.1 + 162804 0.66 0.913366
Target:  5'- cGCUCGUUCGaacagcuaGGG-CCGCGGcguuAUGGCg -3'
miRNA:   3'- uUGAGCAGGCg-------CCUaGGUGUC----UACCG- -5'
24457 3' -55.6 NC_005264.1 + 158586 0.66 0.912775
Target:  5'- aGACUCG-CUGCGcGGcggcaagaggcUCCGCAGAgauggaaucauuaUGGCa -3'
miRNA:   3'- -UUGAGCaGGCGC-CU-----------AGGUGUCU-------------ACCG- -5'
24457 3' -55.6 NC_005264.1 + 75290 0.66 0.909784
Target:  5'- uGCUgGUCCGaugcggacgacuccuCGGAggCCGCGGgcGGCu -3'
miRNA:   3'- uUGAgCAGGC---------------GCCUa-GGUGUCuaCCG- -5'
24457 3' -55.6 NC_005264.1 + 26122 0.66 0.907349
Target:  5'- cGGCUCGUggCGCGGcgCCGagAGaAUGGCg -3'
miRNA:   3'- -UUGAGCAg-GCGCCuaGGUg-UC-UACCG- -5'
24457 3' -55.6 NC_005264.1 + 123540 0.66 0.907349
Target:  5'- gGACUgggCGUCCGCGGAgggggAgGGGUGGUc -3'
miRNA:   3'- -UUGA---GCAGGCGCCUagg--UgUCUACCG- -5'
24457 3' -55.6 NC_005264.1 + 4513 0.66 0.907349
Target:  5'- gGACUgggCGUCCGCGGAgggggAgGGGUGGUc -3'
miRNA:   3'- -UUGA---GCAGGCGCCUagg--UgUCUACCG- -5'
24457 3' -55.6 NC_005264.1 + 6243 0.67 0.901095
Target:  5'- uGCggCGgccCCGCGGAUCCuCAGucUGGUc -3'
miRNA:   3'- uUGa-GCa--GGCGCCUAGGuGUCu-ACCG- -5'
24457 3' -55.6 NC_005264.1 + 57555 0.67 0.901095
Target:  5'- uGCUaCGUCCGCGGuaccGUUUugGGccuuUGGCg -3'
miRNA:   3'- uUGA-GCAGGCGCC----UAGGugUCu---ACCG- -5'
24457 3' -55.6 NC_005264.1 + 93123 0.67 0.887893
Target:  5'- cGCUC--CCGCGG-UUCAC-GAUGGCg -3'
miRNA:   3'- uUGAGcaGGCGCCuAGGUGuCUACCG- -5'
24457 3' -55.6 NC_005264.1 + 77478 0.67 0.880951
Target:  5'- cGGCUCGg--GCuGGGUCCACucugaauuaGGAUGGCc -3'
miRNA:   3'- -UUGAGCaggCG-CCUAGGUG---------UCUACCG- -5'
24457 3' -55.6 NC_005264.1 + 124376 0.67 0.880951
Target:  5'- cGCUCGUCCcggGCGGccUCGCGGAUGa- -3'
miRNA:   3'- uUGAGCAGG---CGCCuaGGUGUCUACcg -5'
24457 3' -55.6 NC_005264.1 + 5349 0.67 0.880951
Target:  5'- cGCUCGUCCcggGCGGccUCGCGGAUGa- -3'
miRNA:   3'- uUGAGCAGG---CGCCuaGGUGUCUACcg -5'
24457 3' -55.6 NC_005264.1 + 97653 0.67 0.880951
Target:  5'- cAGCUCGgcgaaaaggCCGCGGccauggCCAgAGAgGGCg -3'
miRNA:   3'- -UUGAGCa--------GGCGCCua----GGUgUCUaCCG- -5'
24457 3' -55.6 NC_005264.1 + 16429 0.67 0.866408
Target:  5'- cGCUCGacugCCGCGGGgccugcCCGCGGGUGu- -3'
miRNA:   3'- uUGAGCa---GGCGCCUa-----GGUGUCUACcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.